Wall clock time and date at job start Mon Mar 30 2020 02:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 240.00081 * 4 2 1 6 6 C 1.37885 * 119.99902 * 59.99918 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 C 1.50698 * 109.46939 * 119.99737 * 2 1 3 13 13 C 1.32884 * 125.80035 * 264.71136 * 12 2 1 14 14 N 1.38567 * 108.50498 * 179.84451 * 13 12 2 15 15 C 1.37444 * 144.87267 * 180.02562 * 14 13 12 16 16 C 1.34660 * 106.97219 * 180.41983 * 15 14 13 17 17 N 1.34132 * 108.35592 * 359.97438 * 16 15 14 18 18 C 1.31700 * 109.28781 * 0.02650 * 17 16 15 19 19 N 1.37613 * 144.38886 * 179.97438 * 18 17 16 20 20 H 0.96997 * 126.13226 * 0.02562 * 19 18 17 21 21 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 22 22 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 23 23 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 25 25 H 1.08003 * 125.74755 * 359.97438 * 13 12 2 26 26 H 1.07997 * 126.51724 * 0.43691 * 15 14 13 27 27 H 1.07999 * 125.82403 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 1.3553 -2.1611 -4.4148 10 1 2.4907 -0.1345 -5.1107 11 1 3.6387 -1.7477 -3.7105 12 6 2.0323 -0.7103 1.2305 13 6 2.3850 -0.1308 2.3731 14 7 2.7868 -1.1163 3.2604 15 6 3.2571 -1.3638 4.5279 16 6 3.4232 -2.6961 4.6324 17 7 3.0672 -3.2587 3.4680 18 6 2.6814 -2.3184 2.6305 19 7 2.2108 -2.0759 1.3602 20 1 2.0350 -2.7429 0.6784 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7089 1.1613 -3.4844 25 1 2.3605 0.9296 2.5766 26 1 3.4555 -0.6295 5.2946 27 1 3.7818 -3.2219 5.5049 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260630777.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:31 Heat of formation + Delta-G solvation = 109.005776 kcal Electronic energy + Delta-G solvation = -12852.030330 eV Core-core repulsion = 10612.264252 eV Total energy + Delta-G solvation = -2239.766077 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.69606 -37.97790 -34.23184 -32.53672 -31.04324 -28.05908 -27.36448 -25.37944 -22.45562 -21.21014 -20.52503 -19.48260 -16.90156 -16.30832 -15.59509 -15.33221 -14.91832 -13.83260 -13.57384 -12.97895 -12.73210 -12.62708 -12.11923 -11.46332 -11.09139 -10.83459 -10.70138 -10.48518 -10.39507 -10.02973 -9.52852 -9.24047 -8.62404 -7.73092 -7.12401 -6.25250 -4.35099 2.41280 2.99199 3.03631 3.18063 3.25959 3.29212 3.57960 3.66265 4.24717 5.06150 5.07937 5.33834 5.73463 5.85007 6.08717 6.20491 6.41382 6.66320 6.81765 6.85667 6.94129 7.17091 7.41734 7.59700 7.75163 7.86656 7.97973 8.06955 8.61919 8.65690 9.32500 10.80363 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.056677 B = 0.008722 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.906018 B = 3209.660025 C = 3515.369595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.099 3.901 3 H 0.060 0.940 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.155 3.845 13 C -0.105 4.105 14 N -0.396 5.396 15 C -0.106 4.106 16 C 0.016 3.984 17 N -0.527 5.527 18 C 0.376 3.624 19 N -0.572 5.572 20 H 0.437 0.563 21 H 0.016 0.984 22 H 0.093 0.907 23 H 0.029 0.971 24 H 0.265 0.735 25 H 0.175 0.825 26 H 0.167 0.833 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -1.124 7.325 7.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.079 3.921 3 H 0.078 0.922 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.045 3.955 13 C -0.227 4.227 14 N -0.074 5.074 15 C -0.238 4.238 16 C -0.135 4.135 17 N -0.257 5.257 18 C 0.026 3.974 19 N -0.191 5.191 20 H 0.279 0.721 21 H 0.035 0.965 22 H 0.112 0.888 23 H 0.048 0.952 24 H 0.075 0.925 25 H 0.192 0.808 26 H 0.185 0.815 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.255 -1.695 7.049 7.358 hybrid contribution 0.284 0.190 -0.865 0.930 sum 1.539 -1.505 6.184 6.548 Atomic orbital electron populations 1.21803 0.96432 0.99784 1.01116 1.17713 0.93273 0.95379 0.85709 0.92211 1.20945 1.32493 1.13266 0.89948 0.92358 1.24910 0.94552 0.94802 0.99113 1.69851 1.35788 1.22335 1.24050 0.86505 0.79403 0.79411 0.82254 1.20441 1.20970 1.19771 1.21598 0.96310 0.80514 0.97070 1.21143 1.18106 0.94636 0.88786 1.43585 1.44245 1.08688 1.10846 1.21828 1.16783 0.98425 0.86791 1.22095 1.04782 0.90550 0.96028 1.70253 1.26113 1.28009 1.01333 1.20668 1.04882 0.84060 0.87766 1.41359 1.60157 1.08285 1.09298 0.72107 0.96523 0.88844 0.95181 0.92481 0.80804 0.81532 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.95 37.16 0.33 -2.56 15 2 C 0.10 2.21 2.67 -92.93 -0.25 1.97 15 3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 15 4 C -0.53 -13.02 8.34 -34.44 -0.29 -13.31 15 5 H 0.06 1.42 7.08 -52.49 -0.37 1.05 15 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 15 7 N -0.88 -22.96 11.32 55.43 0.63 -22.33 15 8 Si 0.90 19.82 29.54 -169.99 -5.02 14.79 15 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 11 H -0.27 -6.06 7.11 56.52 0.40 -5.65 15 12 C 0.15 3.17 5.82 -81.51 -0.47 2.69 15 13 C -0.10 -1.99 11.79 -16.35 -0.19 -2.18 15 14 N -0.40 -7.66 3.53 -63.97 -0.23 -7.89 15 15 C -0.11 -1.75 12.04 -16.30 -0.20 -1.95 15 16 C 0.02 0.27 11.85 -17.81 -0.21 0.05 15 17 N -0.53 -10.61 11.30 -14.00 -0.16 -10.77 15 18 C 0.38 7.75 9.64 -320.12 -3.08 4.67 15 19 N -0.57 -11.44 5.88 -9.69 -0.06 -11.50 15 20 H 0.44 8.15 8.40 -40.82 -0.34 7.81 15 21 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 15 22 H 0.09 2.22 6.07 -51.93 -0.32 1.91 15 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 24 H 0.27 6.61 8.31 -40.82 -0.34 6.27 15 25 H 0.17 2.81 8.06 -52.48 -0.42 2.39 15 26 H 0.17 2.13 8.06 -52.49 -0.42 1.70 15 27 H 0.17 2.16 8.06 -52.49 -0.42 1.73 15 LS Contribution 237.74 15.07 3.58 3.58 Total: -1.00 -27.97 237.74 -8.41 -36.38 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -2.70 Total: 6.69 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -4.46 Total: -8.96 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.19 Total: -52.49 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.97 -8.41 -36.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260630777.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.388 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds