Wall clock time and date at job start Mon Mar 30 2020 02:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 240.00081 * 4 2 1 6 6 C 1.37885 * 119.99902 * 59.99918 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 C 1.50698 * 109.46939 * 119.99737 * 2 1 3 13 13 C 1.32884 * 125.80035 * 264.71136 * 12 2 1 14 14 N 1.38567 * 108.50498 * 179.84451 * 13 12 2 15 15 C 1.37444 * 144.87267 * 180.02562 * 14 13 12 16 16 C 1.34660 * 106.97219 * 180.41983 * 15 14 13 17 17 N 1.34132 * 108.35592 * 359.97438 * 16 15 14 18 18 C 1.31700 * 109.28781 * 0.02650 * 17 16 15 19 19 N 1.37613 * 144.38886 * 179.97438 * 18 17 16 20 20 H 0.96997 * 126.13226 * 0.02562 * 19 18 17 21 21 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 22 22 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 23 23 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 25 25 H 1.08003 * 125.74755 * 359.97438 * 13 12 2 26 26 H 1.07997 * 126.51724 * 0.43691 * 15 14 13 27 27 H 1.07999 * 125.82403 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 1.3553 -2.1611 -4.4148 10 1 2.4907 -0.1345 -5.1107 11 1 3.6387 -1.7477 -3.7105 12 6 2.0323 -0.7103 1.2305 13 6 2.3850 -0.1308 2.3731 14 7 2.7868 -1.1163 3.2604 15 6 3.2571 -1.3638 4.5279 16 6 3.4232 -2.6961 4.6324 17 7 3.0672 -3.2587 3.4680 18 6 2.6814 -2.3184 2.6305 19 7 2.2108 -2.0759 1.3602 20 1 2.0350 -2.7429 0.6784 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7089 1.1613 -3.4844 25 1 2.3605 0.9296 2.5766 26 1 3.4555 -0.6295 5.2946 27 1 3.7818 -3.2219 5.5049 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260630777.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:31 Heat of formation + Delta-G solvation = 95.745883 kcal Electronic energy + Delta-G solvation = -12852.605322 eV Core-core repulsion = 10612.264252 eV Total energy + Delta-G solvation = -2240.341069 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.13077 -39.45281 -36.01720 -34.00846 -32.84836 -29.47339 -28.86942 -27.25588 -24.08628 -22.67126 -21.94431 -21.08175 -18.51826 -17.98274 -17.06555 -16.82660 -16.69104 -15.37113 -15.05289 -14.51963 -14.41332 -13.99878 -13.75736 -13.19343 -12.86138 -12.56313 -12.30459 -12.23292 -12.02741 -11.81467 -11.07635 -10.94984 -10.53449 -9.17276 -8.55867 -8.16483 -6.30783 0.96810 1.42212 1.45616 1.52699 1.55913 1.57310 2.16669 2.27348 2.41441 3.14531 3.64812 4.00611 4.37566 4.49882 4.63180 4.76267 4.82963 5.06885 5.11545 5.14996 5.49706 5.58000 5.73523 5.87234 5.96608 6.20288 6.41398 6.53267 6.74659 7.21146 7.38908 8.88235 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.056677 B = 0.008722 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.906018 B = 3209.660025 C = 3515.369595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.103 3.897 3 H 0.046 0.954 4 C -0.538 4.538 5 H 0.055 0.945 6 C 0.027 3.973 7 N -0.906 5.906 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.133 3.867 13 C -0.093 4.093 14 N -0.405 5.405 15 C -0.102 4.102 16 C 0.010 3.990 17 N -0.553 5.553 18 C 0.348 3.652 19 N -0.576 5.576 20 H 0.438 0.562 21 H 0.036 0.964 22 H 0.070 0.930 23 H 0.026 0.974 24 H 0.265 0.735 25 H 0.201 0.799 26 H 0.207 0.793 27 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 -1.176 8.656 8.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.063 0.937 4 C -0.576 4.576 5 H 0.073 0.927 6 C -0.173 4.173 7 N -0.545 5.545 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.024 3.976 13 C -0.215 4.215 14 N -0.083 5.083 15 C -0.232 4.232 16 C -0.139 4.139 17 N -0.284 5.284 18 C -0.002 4.002 19 N -0.195 5.195 20 H 0.279 0.721 21 H 0.055 0.945 22 H 0.089 0.911 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.218 0.782 26 H 0.224 0.776 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.862 -1.755 8.398 8.779 hybrid contribution 0.134 0.186 -1.158 1.180 sum 1.996 -1.569 7.241 7.673 Atomic orbital electron populations 1.21647 0.96121 0.99457 1.00910 1.17494 0.93519 0.94583 0.86061 0.93654 1.21233 1.32163 1.13185 0.91054 0.92694 1.25545 0.94885 0.95458 1.01444 1.69950 1.36714 1.23351 1.24453 0.85650 0.78722 0.78411 0.79425 1.20107 1.20913 1.19897 1.21273 0.98363 0.80887 0.97126 1.21509 1.16160 0.95665 0.88190 1.43857 1.44505 1.08208 1.11725 1.22630 1.14906 0.99417 0.86292 1.22860 1.03930 0.91069 0.96027 1.70239 1.26732 1.28871 1.02570 1.20911 1.06166 0.84968 0.88117 1.41300 1.60509 1.08157 1.09544 0.72096 0.94532 0.91099 0.95476 0.92531 0.78174 0.77608 0.77099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.95 71.98 0.64 -4.70 15 2 C 0.10 4.62 2.67 -12.29 -0.03 4.59 15 3 H 0.05 2.15 8.14 -2.39 -0.02 2.13 15 4 C -0.54 -26.65 8.34 25.60 0.21 -26.44 15 5 H 0.05 2.70 7.08 -2.91 -0.02 2.67 15 6 C 0.03 1.38 5.30 84.66 0.45 1.83 15 7 N -0.91 -47.48 11.32 21.45 0.24 -47.23 15 8 Si 0.95 40.71 29.54 68.60 2.03 42.73 15 9 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 12 C 0.13 5.35 5.82 40.36 0.23 5.59 15 13 C -0.09 -3.36 11.79 82.45 0.97 -2.38 15 14 N -0.40 -14.75 3.53 -356.30 -1.26 -16.00 15 15 C -0.10 -3.01 12.04 82.99 1.00 -2.01 15 16 C 0.01 0.30 11.85 83.52 0.99 1.29 15 17 N -0.55 -21.42 11.30 -198.21 -2.24 -23.66 15 18 C 0.35 13.97 9.64 260.55 2.51 16.48 15 19 N -0.58 -22.93 5.88 -184.59 -1.08 -24.01 15 20 H 0.44 16.56 8.40 -92.71 -0.78 15.78 15 21 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.07 3.40 6.07 -2.39 -0.01 3.39 15 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 15 24 H 0.27 13.31 8.31 -92.71 -0.77 12.54 15 25 H 0.20 5.94 8.06 -2.91 -0.02 5.91 15 26 H 0.21 4.24 8.06 -2.91 -0.02 4.22 15 27 H 0.21 4.42 8.06 -2.91 -0.02 4.39 15 Total: -1.00 -58.61 237.74 5.08 -53.54 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.41 Total: 20.40 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 6.98 Total: -5.76 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -4.34 Total: -110.91 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.73 kcal Total: -58.61 5.08 -53.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260630777.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.281 kcal (2) G-P(sol) polarization free energy of solvation -58.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds