Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01511 * 300.06626 * 9 7 2 11 11 C 1.54264 * 110.02894 * 61.45185 * 9 7 2 12 12 C 1.54896 * 104.19386 * 142.89811 * 11 9 7 13 13 C 1.54886 * 102.74493 * 322.05768 * 12 11 9 14 14 C 1.53867 * 110.03248 * 178.61985 * 9 7 2 15 15 H 1.08996 * 110.03593 * 359.97438 * 14 9 7 16 16 N 1.46502 * 110.03050 * 121.43363 * 14 9 7 17 17 C 1.36336 * 125.63801 * 59.69024 * 16 14 9 18 18 C 1.34850 * 108.21887 * 179.83264 * 17 16 14 19 19 C 1.40897 * 107.41861 * 0.42349 * 18 17 16 20 20 C 1.34851 * 107.41075 * 359.73653 * 19 18 17 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09003 * 110.49006 * 261.57318 * 11 9 7 23 23 H 1.08996 * 110.49219 * 24.08568 * 11 9 7 24 24 H 1.08999 * 110.75551 * 80.36875 * 12 11 9 25 25 H 1.08996 * 110.75345 * 203.74191 * 12 11 9 26 26 H 1.09003 * 110.48550 * 156.62550 * 13 12 11 27 27 H 1.08998 * 110.48454 * 279.12872 * 13 12 11 28 28 H 1.07999 * 125.89378 * 359.96476 * 17 16 14 29 29 H 1.08003 * 126.29384 * 180.16366 * 18 17 16 30 30 H 1.07994 * 126.29504 * 179.73454 * 19 18 17 31 31 H 1.08010 * 125.88498 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6199 -2.5655 0.8867 11 6 0.3876 -2.6107 -1.2729 12 6 0.4714 -4.1086 -1.6586 13 6 1.9416 -4.4652 -1.3266 14 6 2.2392 -3.6782 -0.0336 15 1 3.2637 -3.3064 -0.0507 16 7 2.0354 -4.5377 1.1351 17 6 0.8787 -5.1858 1.4526 18 6 1.0820 -5.8773 2.5923 19 6 2.4101 -5.6399 2.9984 20 6 2.9695 -4.8170 2.0882 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.6437 -2.3286 -1.0605 23 1 0.7969 -1.9867 -2.0673 24 1 -0.2157 -4.7018 -1.0552 25 1 0.2711 -4.2456 -2.7212 26 1 2.0445 -5.5364 -1.1535 27 1 2.6029 -4.1446 -2.1315 28 1 -0.0411 -5.1529 0.8876 29 1 0.3584 -6.4958 3.1025 30 1 2.8916 -6.0428 3.8771 31 1 3.9826 -4.4433 2.1107 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260911884.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = 32.032331 kcal Electronic energy + Delta-G solvation = -13468.301061 eV Core-core repulsion = 11328.737508 eV Total energy + Delta-G solvation = -2139.563553 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.69937 -37.23155 -32.86523 -30.99444 -28.20771 -27.93097 -26.77349 -23.82658 -20.71557 -20.08598 -19.67391 -18.76798 -16.96048 -16.70009 -14.64573 -14.10791 -13.82994 -13.53884 -13.22999 -12.70550 -12.65990 -11.90627 -11.81480 -11.53347 -11.10237 -10.93782 -10.63005 -10.45048 -10.31835 -10.13424 -10.02967 -9.75450 -8.63877 -8.42157 -7.92407 -7.58567 -6.41205 -4.15495 2.92705 3.38881 3.40438 3.57390 3.59023 3.68883 4.47038 5.14784 5.29457 5.37026 5.47320 5.61942 5.74718 5.86930 6.02741 6.12545 6.17797 6.27369 6.34908 6.40409 6.46447 6.74933 6.78369 6.84553 6.93164 7.18244 7.47387 7.56808 7.89603 8.01199 8.15184 8.31532 8.78618 9.56275 10.96438 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.035800 B = 0.010855 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.934111 B = 2578.914063 C = 2933.867495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.049 0.951 9 C 0.029 3.971 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.129 4.129 13 C -0.128 4.128 14 C 0.132 3.868 15 H 0.092 0.908 16 N -0.421 5.421 17 C -0.006 4.006 18 C -0.220 4.220 19 C -0.217 4.217 20 C -0.015 4.015 21 H 0.273 0.727 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -8.166 -0.619 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.182 4.182 3 Si 0.895 3.105 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.637 4.637 8 H 0.068 0.932 9 C 0.010 3.990 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.167 4.167 13 C -0.166 4.166 14 C 0.031 3.969 15 H 0.110 0.890 16 N -0.094 5.094 17 C -0.138 4.138 18 C -0.245 4.245 19 C -0.242 4.242 20 C -0.147 4.147 21 H 0.085 0.915 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.169 0.831 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.929 -6.276 -0.937 6.989 hybrid contribution 0.228 -1.641 0.070 1.658 sum 3.157 -7.917 -0.866 8.568 Atomic orbital electron populations 1.70801 1.06842 1.31160 1.45616 1.25770 0.96524 1.02497 0.93445 0.83572 0.74962 0.75452 0.76541 1.20704 1.21436 1.21415 1.21959 0.93804 0.91145 1.56809 0.93248 1.19775 0.92748 0.92254 0.94263 0.95153 1.22626 0.99929 0.92732 0.99794 1.22630 0.95444 0.98744 0.99877 1.22672 0.98030 0.98929 0.96968 1.22493 1.02426 0.90057 0.81918 0.88965 1.44579 1.09775 1.35440 1.19613 1.21688 0.91341 1.00808 0.99939 1.20735 0.97471 1.07254 0.99014 1.20709 0.95967 1.05893 1.01604 1.21768 0.95763 1.04468 0.92733 0.91517 0.92827 0.91762 0.92476 0.92488 0.92109 0.90688 0.83113 0.85655 0.85644 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.70 13.41 55.43 0.74 -25.95 16 2 C 0.02 0.63 5.32 -17.82 -0.09 0.54 16 3 Si 1.07 24.70 29.90 -169.99 -5.08 19.62 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.60 -16.21 8.38 -34.44 -0.29 -16.50 16 8 H 0.05 1.32 7.33 -52.48 -0.38 0.94 16 9 C 0.03 0.69 2.10 -90.66 -0.19 0.49 16 10 H 0.03 0.82 7.38 -51.93 -0.38 0.44 16 11 C -0.11 -2.47 5.24 -25.07 -0.13 -2.60 16 12 C -0.13 -2.29 6.69 -24.74 -0.17 -2.45 16 13 C -0.13 -2.23 6.18 -25.08 -0.16 -2.38 16 14 C 0.13 2.69 3.27 -66.82 -0.22 2.48 16 15 H 0.09 1.91 7.31 -51.93 -0.38 1.53 16 16 N -0.42 -8.29 2.55 -108.84 -0.28 -8.57 16 17 C -0.01 -0.11 10.11 -16.75 -0.17 -0.28 16 18 C -0.22 -3.91 10.86 -39.78 -0.43 -4.34 16 19 C -0.22 -3.80 10.86 -39.78 -0.43 -4.23 16 20 C -0.02 -0.29 11.40 -16.75 -0.19 -0.48 16 21 H 0.27 7.91 5.42 -40.82 -0.22 7.69 16 22 H 0.05 1.23 6.83 -51.93 -0.35 0.87 16 23 H 0.06 1.51 7.85 -51.93 -0.41 1.10 16 24 H 0.06 0.96 6.64 -51.93 -0.34 0.61 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.15 2.65 6.59 -52.49 -0.35 2.31 16 29 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.15 2.45 8.06 -52.48 -0.42 2.03 16 LS Contribution 251.42 15.07 3.79 3.79 Total: -1.00 -29.24 251.42 -7.45 -36.69 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.15 Total: 4.18 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -2.47 Total: -29.75 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.47 Total: -34.52 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.08 Total: 19.62 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.24 -7.45 -36.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911884.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.721 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds