Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.01511 * 300.06626 * 9 7 2 11 11 C 1.54264 * 110.02894 * 61.45185 * 9 7 2 12 12 C 1.54896 * 104.19386 * 142.89811 * 11 9 7 13 13 C 1.54886 * 102.74493 * 322.05768 * 12 11 9 14 14 C 1.53867 * 110.03248 * 178.61985 * 9 7 2 15 15 H 1.08996 * 110.03593 * 359.97438 * 14 9 7 16 16 N 1.46502 * 110.03050 * 121.43363 * 14 9 7 17 17 C 1.36336 * 125.63801 * 59.69024 * 16 14 9 18 18 C 1.34850 * 108.21887 * 179.83264 * 17 16 14 19 19 C 1.40897 * 107.41861 * 0.42349 * 18 17 16 20 20 C 1.34851 * 107.41075 * 359.73653 * 19 18 17 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09003 * 110.49006 * 261.57318 * 11 9 7 23 23 H 1.08996 * 110.49219 * 24.08568 * 11 9 7 24 24 H 1.08999 * 110.75551 * 80.36875 * 12 11 9 25 25 H 1.08996 * 110.75345 * 203.74191 * 12 11 9 26 26 H 1.09003 * 110.48550 * 156.62550 * 13 12 11 27 27 H 1.08998 * 110.48454 * 279.12872 * 13 12 11 28 28 H 1.07999 * 125.89378 * 359.96476 * 17 16 14 29 29 H 1.08003 * 126.29384 * 180.16366 * 18 17 16 30 30 H 1.07994 * 126.29504 * 179.73454 * 19 18 17 31 31 H 1.08010 * 125.88498 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6199 -2.5655 0.8867 11 6 0.3876 -2.6107 -1.2729 12 6 0.4714 -4.1086 -1.6586 13 6 1.9416 -4.4652 -1.3266 14 6 2.2392 -3.6782 -0.0336 15 1 3.2637 -3.3064 -0.0507 16 7 2.0354 -4.5377 1.1351 17 6 0.8787 -5.1858 1.4526 18 6 1.0820 -5.8773 2.5923 19 6 2.4101 -5.6399 2.9984 20 6 2.9695 -4.8170 2.0882 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.6437 -2.3286 -1.0605 23 1 0.7969 -1.9867 -2.0673 24 1 -0.2157 -4.7018 -1.0552 25 1 0.2711 -4.2456 -2.7212 26 1 2.0445 -5.5364 -1.1535 27 1 2.6029 -4.1446 -2.1315 28 1 -0.0411 -5.1529 0.8876 29 1 0.3584 -6.4958 3.1025 30 1 2.8916 -6.0428 3.8771 31 1 3.9826 -4.4433 2.1107 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260911884.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = 17.215184 kcal Electronic energy + Delta-G solvation = -13468.943580 eV Core-core repulsion = 11328.737508 eV Total energy + Delta-G solvation = -2140.206073 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.15302 -38.88229 -34.86191 -32.49689 -29.82317 -29.55689 -28.34802 -25.80961 -22.24026 -21.65388 -21.18308 -20.33530 -18.93695 -18.27506 -16.17509 -15.74592 -15.67068 -15.17635 -14.66946 -14.39381 -14.20955 -13.74855 -13.18324 -12.92342 -12.88484 -12.66210 -12.23141 -12.05036 -12.02086 -11.83446 -11.74153 -11.52532 -10.66678 -10.50309 -9.39243 -9.00565 -8.61156 -6.36232 1.47996 1.50961 1.57909 1.76741 2.19446 2.21798 2.55300 3.17127 3.62215 3.78407 4.01127 4.19464 4.36531 4.38937 4.54100 4.66516 4.69327 4.74808 4.79917 4.86322 4.96533 5.10380 5.25508 5.35125 5.41983 5.47987 5.57474 5.98654 6.16818 6.20174 6.48108 6.58966 6.64407 7.43598 8.76667 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.035800 B = 0.010855 C = 0.009541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.934111 B = 2578.914063 C = 2933.867495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.028 4.028 3 Si 1.110 2.890 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.610 4.610 8 H 0.048 0.952 9 C 0.025 3.975 10 H -0.008 1.008 11 C -0.106 4.106 12 C -0.117 4.117 13 C -0.117 4.117 14 C 0.137 3.863 15 H 0.085 0.915 16 N -0.433 5.433 17 C -0.027 4.027 18 C -0.222 4.222 19 C -0.218 4.218 20 C -0.036 4.036 21 H 0.263 0.737 22 H 0.034 0.966 23 H 0.044 0.956 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -9.238 -0.831 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.227 4.227 3 Si 0.932 3.068 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.648 4.648 8 H 0.066 0.934 9 C 0.006 3.994 10 H 0.010 0.990 11 C -0.144 4.144 12 C -0.154 4.154 13 C -0.155 4.155 14 C 0.035 3.965 15 H 0.104 0.896 16 N -0.107 5.107 17 C -0.158 4.158 18 C -0.247 4.247 19 C -0.242 4.242 20 C -0.167 4.167 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.174 0.826 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.938 -7.380 -1.146 8.443 hybrid contribution -0.091 -1.338 0.213 1.358 sum 3.847 -8.718 -0.933 9.574 Atomic orbital electron populations 1.70904 1.07832 1.30678 1.47963 1.27127 0.96613 1.06134 0.92790 0.83015 0.74218 0.71721 0.77822 1.21158 1.20100 1.19231 1.22372 0.94024 0.92716 1.55703 0.93417 1.19701 0.93162 0.92966 0.93543 0.98959 1.22399 0.98045 0.95837 0.98134 1.22566 0.96074 0.95104 1.01696 1.22627 0.97808 0.99498 0.95568 1.22267 1.00702 0.89571 0.83955 0.89645 1.44592 1.10475 1.35766 1.19854 1.21978 0.91507 1.01428 1.00902 1.21122 0.98138 1.06897 0.98527 1.21097 0.95909 1.05226 1.02007 1.22246 0.96591 1.05038 0.92786 0.92608 0.94764 0.93685 0.91512 0.89800 0.90307 0.89352 0.82624 0.83351 0.83089 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.46 13.41 21.45 0.29 -56.18 16 2 C -0.03 -1.56 5.32 84.65 0.45 -1.11 16 3 Si 1.11 49.69 29.90 68.60 2.05 51.75 16 4 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.61 -33.46 8.38 25.60 0.21 -33.25 16 8 H 0.05 2.56 7.33 -2.91 -0.02 2.54 16 9 C 0.03 1.24 2.10 -10.82 -0.02 1.21 16 10 H -0.01 -0.43 7.38 -2.39 -0.02 -0.45 16 11 C -0.11 -4.70 5.24 31.67 0.17 -4.53 16 12 C -0.12 -3.92 6.69 31.89 0.21 -3.71 16 13 C -0.12 -3.82 6.18 31.67 0.20 -3.62 16 14 C 0.14 5.48 3.27 45.71 0.15 5.63 16 15 H 0.09 3.49 7.31 -2.39 -0.02 3.47 16 16 N -0.43 -16.64 2.55 -498.25 -1.27 -17.91 16 17 C -0.03 -0.99 10.11 83.21 0.84 -0.15 16 18 C -0.22 -7.45 10.86 22.14 0.24 -7.21 16 19 C -0.22 -7.15 10.86 22.14 0.24 -6.91 16 20 C -0.04 -1.27 11.40 83.21 0.95 -0.32 16 21 H 0.26 15.88 5.42 -92.71 -0.50 15.38 16 22 H 0.03 1.61 6.83 -2.39 -0.02 1.60 16 23 H 0.04 2.14 7.85 -2.39 -0.02 2.12 16 24 H 0.07 2.12 6.64 -2.39 -0.02 2.10 16 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.08 2.33 8.04 -2.39 -0.02 2.31 16 27 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.16 5.36 6.59 -2.91 -0.02 5.34 16 29 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 31 H 0.17 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -63.10 251.42 6.07 -57.03 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 1.36 Total: 19.27 kcal Atomic # 6 Polarization: -57.60 SS G_CDS: 3.64 Total: -53.96 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -0.98 Total: -74.09 kcal Atomic # 14 Polarization: 49.69 SS G_CDS: 2.05 Total: 51.75 kcal Total: -63.10 6.07 -57.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911884.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.248 kcal (2) G-P(sol) polarization free energy of solvation -63.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds