Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00229 * 2 1 4 4 H 1.48496 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46998 * 300.00396 * 3 2 1 6 6 H 1.48498 * 109.46688 * 60.00079 * 3 2 1 7 7 C 1.37885 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99690 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.01765 * 53.37352 * 9 7 2 11 11 C 1.54266 * 110.03419 * 291.92764 * 9 7 2 12 12 C 1.54893 * 104.19400 * 217.10463 * 11 9 7 13 13 C 1.54889 * 102.74924 * 37.94606 * 12 11 9 14 14 C 1.53871 * 110.02977 * 174.76077 * 9 7 2 15 15 H 1.09000 * 110.03720 * 238.57267 * 14 9 7 16 16 N 1.46504 * 110.03414 * 0.02562 * 14 9 7 17 17 C 1.36338 * 125.63429 * 257.46388 * 16 14 9 18 18 C 1.34845 * 108.22015 * 179.82985 * 17 16 14 19 19 C 1.40896 * 107.41625 * 0.42371 * 18 17 16 20 20 C 1.34854 * 107.41535 * 359.73722 * 19 18 17 21 21 H 0.97000 * 120.00069 * 180.02562 * 1 2 3 22 22 H 1.09001 * 110.48709 * 335.78546 * 11 9 7 23 23 H 1.09006 * 110.47985 * 98.42940 * 11 9 7 24 24 H 1.08996 * 110.75668 * 279.62818 * 12 11 9 25 25 H 1.08998 * 110.90921 * 156.33309 * 12 11 9 26 26 H 1.08999 * 110.48650 * 203.37645 * 13 12 11 27 27 H 1.09002 * 110.59734 * 80.78397 * 13 12 11 28 28 H 1.08001 * 125.89230 * 359.96313 * 17 16 14 29 29 H 1.08001 * 126.29851 * 180.16583 * 18 17 16 30 30 H 1.07994 * 126.29209 * 179.73913 * 19 18 17 31 31 H 1.07994 * 125.89469 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5350 -2.5166 -0.8222 11 6 0.5186 -2.6865 1.3442 12 6 0.6361 -4.2038 1.6325 13 6 2.0649 -4.5366 1.1356 14 6 2.2342 -3.6754 -0.1332 15 1 1.9948 -4.2642 -1.0187 16 7 3.6080 -3.1740 -0.2191 17 6 4.3487 -3.0779 -1.3597 18 6 5.5555 -2.5699 -1.0373 19 6 5.5636 -2.3534 0.3549 20 6 4.3593 -2.7318 0.8292 21 1 -0.4850 -0.8400 0.0004 22 1 1.0084 -2.1100 2.1289 23 1 -0.5279 -2.3955 1.2522 24 1 -0.1095 -4.7632 1.0675 25 1 0.5414 -4.4055 2.6995 26 1 2.1469 -5.5957 0.8915 27 1 2.8058 -4.2603 1.8857 28 1 4.0240 -3.3580 -2.3510 29 1 6.3682 -2.3701 -1.7200 30 1 6.3835 -1.9571 0.9354 31 1 4.0440 -2.6911 1.8613 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260911888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = 44.294033 kcal Electronic energy + Delta-G solvation = -13731.904877 eV Core-core repulsion = 11592.873031 eV Total energy + Delta-G solvation = -2139.031846 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.60324 -37.09868 -32.71350 -30.99361 -28.08928 -27.81631 -26.40305 -23.81748 -20.74794 -19.95810 -19.38118 -18.55914 -17.37876 -15.72148 -15.21971 -13.93245 -13.89135 -13.44591 -13.04229 -12.61621 -12.51378 -11.68284 -11.46559 -11.24877 -11.01288 -10.89992 -10.60820 -10.39103 -10.24051 -10.08421 -10.00028 -9.75135 -8.42594 -8.30677 -7.63400 -7.26301 -6.27011 -3.99822 3.20957 3.49411 3.50822 3.69456 3.84760 3.91499 4.58750 5.09666 5.32813 5.44099 5.49246 5.77046 5.86472 5.96420 6.07578 6.20031 6.26148 6.33025 6.39857 6.40722 6.44444 6.75159 6.92461 7.02572 7.12786 7.16305 7.47708 7.83401 8.14473 8.16205 8.37704 8.60817 8.96352 9.71080 11.09479 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.017794 C = 0.011550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.795262 B = 1573.166879 C = 2423.717986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.594 4.594 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.027 0.973 11 C -0.111 4.111 12 C -0.126 4.126 13 C -0.128 4.128 14 C 0.135 3.865 15 H 0.076 0.924 16 N -0.403 5.403 17 C -0.013 4.013 18 C -0.217 4.217 19 C -0.227 4.227 20 C 0.019 3.981 21 H 0.269 0.731 22 H 0.061 0.939 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.146 0.854 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.799 -7.461 1.260 8.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.183 4.183 3 Si 0.895 3.105 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.632 4.632 8 H 0.095 0.905 9 C 0.000 4.000 10 H 0.045 0.955 11 C -0.149 4.149 12 C -0.164 4.164 13 C -0.166 4.166 14 C 0.033 3.967 15 H 0.094 0.906 16 N -0.074 5.074 17 C -0.144 4.144 18 C -0.242 4.242 19 C -0.252 4.252 20 C -0.113 4.113 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.164 0.836 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.246 -5.949 1.268 7.418 hybrid contribution 0.046 -1.499 -0.089 1.503 sum 4.292 -7.448 1.180 8.677 Atomic orbital electron populations 1.70755 1.07008 1.30680 1.47161 1.25711 0.96404 1.02511 0.93710 0.83574 0.75121 0.75107 0.76685 1.21048 1.21642 1.21646 1.22412 0.95832 0.90281 1.54724 0.90474 1.19760 0.92898 0.93745 0.93558 0.95464 1.22607 1.00028 0.92199 1.00104 1.22523 0.95327 0.98936 0.99654 1.22680 0.98510 0.98172 0.97228 1.22191 0.80660 0.96208 0.97689 0.90629 1.44022 1.10698 1.46261 1.06442 1.21519 0.92717 1.09358 0.90847 1.20596 0.97753 1.10151 0.95706 1.20614 0.98017 1.11460 0.95060 1.21334 0.91502 1.05302 0.93130 0.92005 0.92046 0.93015 0.92359 0.92438 0.92318 0.90849 0.83626 0.86078 0.86033 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.37 13.50 55.43 0.75 -26.62 16 2 C 0.02 0.58 5.36 -17.82 -0.10 0.48 16 3 Si 1.07 26.11 29.90 -169.99 -5.08 21.02 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.59 -16.06 7.64 -34.44 -0.26 -16.33 16 8 H 0.08 2.13 4.40 -52.49 -0.23 1.90 16 9 C 0.02 0.46 2.44 -90.66 -0.22 0.24 16 10 H 0.03 0.70 7.75 -51.93 -0.40 0.30 16 11 C -0.11 -2.40 5.57 -25.07 -0.14 -2.54 16 12 C -0.13 -2.15 6.91 -24.74 -0.17 -2.32 16 13 C -0.13 -2.16 6.41 -25.07 -0.16 -2.32 16 14 C 0.13 2.68 3.62 -66.81 -0.24 2.44 16 15 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 16 N -0.40 -8.30 1.54 -108.83 -0.17 -8.47 16 17 C -0.01 -0.25 11.16 -16.75 -0.19 -0.44 16 18 C -0.22 -4.20 10.86 -39.78 -0.43 -4.63 16 19 C -0.23 -4.46 10.86 -39.78 -0.43 -4.89 16 20 C 0.02 0.40 8.02 -16.75 -0.13 0.26 16 21 H 0.27 7.85 5.76 -40.82 -0.24 7.61 16 22 H 0.06 1.44 7.85 -51.93 -0.41 1.03 16 23 H 0.05 1.16 7.17 -51.93 -0.37 0.79 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.25 6.22 -51.93 -0.32 0.92 16 28 H 0.15 2.55 8.06 -52.49 -0.42 2.12 16 29 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.15 2.83 7.23 -52.49 -0.38 2.45 16 LS Contribution 248.19 15.07 3.74 3.74 Total: -1.00 -29.86 248.19 -7.35 -37.20 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.10 Total: 3.17 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: -2.48 Total: -30.04 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.58 Total: -35.09 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.02 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.86 -7.35 -37.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.496 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds