Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00229 * 2 1 4 4 H 1.48496 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46998 * 300.00396 * 3 2 1 6 6 H 1.48498 * 109.46688 * 60.00079 * 3 2 1 7 7 C 1.37885 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99690 * 359.97438 * 7 2 1 10 10 H 1.08999 * 110.01765 * 53.37352 * 9 7 2 11 11 C 1.54266 * 110.03419 * 291.92764 * 9 7 2 12 12 C 1.54893 * 104.19400 * 217.10463 * 11 9 7 13 13 C 1.54889 * 102.74924 * 37.94606 * 12 11 9 14 14 C 1.53871 * 110.02977 * 174.76077 * 9 7 2 15 15 H 1.09000 * 110.03720 * 238.57267 * 14 9 7 16 16 N 1.46504 * 110.03414 * 0.02562 * 14 9 7 17 17 C 1.36338 * 125.63429 * 257.46388 * 16 14 9 18 18 C 1.34845 * 108.22015 * 179.82985 * 17 16 14 19 19 C 1.40896 * 107.41625 * 0.42371 * 18 17 16 20 20 C 1.34854 * 107.41535 * 359.73722 * 19 18 17 21 21 H 0.97000 * 120.00069 * 180.02562 * 1 2 3 22 22 H 1.09001 * 110.48709 * 335.78546 * 11 9 7 23 23 H 1.09006 * 110.47985 * 98.42940 * 11 9 7 24 24 H 1.08996 * 110.75668 * 279.62818 * 12 11 9 25 25 H 1.08998 * 110.90921 * 156.33309 * 12 11 9 26 26 H 1.08999 * 110.48650 * 203.37645 * 13 12 11 27 27 H 1.09002 * 110.59734 * 80.78397 * 13 12 11 28 28 H 1.08001 * 125.89230 * 359.96313 * 17 16 14 29 29 H 1.08001 * 126.29851 * 180.16583 * 18 17 16 30 30 H 1.07994 * 126.29209 * 179.73913 * 19 18 17 31 31 H 1.07994 * 125.89469 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5350 -2.5166 -0.8222 11 6 0.5186 -2.6865 1.3442 12 6 0.6361 -4.2038 1.6325 13 6 2.0649 -4.5366 1.1356 14 6 2.2342 -3.6754 -0.1332 15 1 1.9948 -4.2642 -1.0187 16 7 3.6080 -3.1740 -0.2191 17 6 4.3487 -3.0779 -1.3597 18 6 5.5555 -2.5699 -1.0373 19 6 5.5636 -2.3534 0.3549 20 6 4.3593 -2.7318 0.8292 21 1 -0.4850 -0.8400 0.0004 22 1 1.0084 -2.1100 2.1289 23 1 -0.5279 -2.3955 1.2522 24 1 -0.1095 -4.7632 1.0675 25 1 0.5414 -4.4055 2.6995 26 1 2.1469 -5.5957 0.8915 27 1 2.8058 -4.2603 1.8857 28 1 4.0240 -3.3580 -2.3510 29 1 6.3682 -2.3701 -1.7200 30 1 6.3835 -1.9571 0.9354 31 1 4.0440 -2.6911 1.8613 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260911888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = 29.193319 kcal Electronic energy + Delta-G solvation = -13732.559693 eV Core-core repulsion = 11592.873031 eV Total energy + Delta-G solvation = -2139.686662 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.14375 -38.71887 -34.74006 -32.52802 -29.74523 -29.47415 -27.96539 -25.82353 -22.25912 -21.62581 -20.94457 -20.13299 -19.19275 -17.47529 -16.91808 -15.78564 -15.42667 -15.14595 -14.60215 -14.32893 -14.01613 -13.37069 -13.03505 -12.86633 -12.78902 -12.63844 -12.26994 -12.01485 -11.91389 -11.78288 -11.75244 -11.47368 -10.48172 -10.40111 -9.19401 -8.82158 -8.47130 -6.20035 1.49514 1.55667 1.65780 1.75161 2.33306 2.39139 2.58257 3.24861 3.70690 3.84353 4.00349 4.29811 4.40404 4.49619 4.61551 4.69210 4.72339 4.82763 4.85712 4.92313 5.01717 5.13947 5.30894 5.37979 5.53419 5.59805 5.63391 6.16532 6.33676 6.41061 6.62691 6.71994 6.86527 7.56361 8.88743 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.017794 C = 0.011550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.795262 B = 1573.166879 C = 2423.717986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.032 4.032 3 Si 1.104 2.896 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.590 4.590 8 H 0.073 0.927 9 C 0.010 3.990 10 H -0.002 1.002 11 C -0.105 4.105 12 C -0.113 4.113 13 C -0.118 4.118 14 C 0.134 3.866 15 H 0.089 0.911 16 N -0.412 5.412 17 C -0.030 4.030 18 C -0.224 4.224 19 C -0.235 4.235 20 C 0.000 4.000 21 H 0.260 0.740 22 H 0.036 0.964 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 -8.596 1.513 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.229 4.229 3 Si 0.929 3.071 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.629 4.629 8 H 0.091 0.909 9 C -0.009 4.009 10 H 0.016 0.984 11 C -0.144 4.144 12 C -0.150 4.150 13 C -0.156 4.156 14 C 0.031 3.969 15 H 0.107 0.893 16 N -0.084 5.084 17 C -0.162 4.162 18 C -0.249 4.249 19 C -0.260 4.260 20 C -0.132 4.132 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.181 0.819 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.337 -7.099 1.523 9.011 hybrid contribution -0.256 -1.160 -0.200 1.204 sum 5.081 -8.258 1.323 9.786 Atomic orbital electron populations 1.70840 1.07848 1.30261 1.49886 1.26817 0.96583 1.05713 0.93825 0.83057 0.74495 0.72590 0.76949 1.20257 1.21289 1.20975 1.22730 0.95840 0.91713 1.52576 0.90939 1.19765 0.93317 0.94276 0.93548 0.98352 1.22371 0.98106 0.95786 0.98109 1.22462 0.96081 0.94923 1.01571 1.22648 0.98056 0.99384 0.95487 1.22196 0.79586 0.95022 1.00064 0.89252 1.44135 1.10847 1.46651 1.06755 1.21994 0.93127 1.09544 0.91512 1.20970 0.98297 1.09548 0.96047 1.20983 0.98374 1.11022 0.95602 1.21585 0.92052 1.05982 0.93532 0.92914 0.94467 0.94887 0.90572 0.90054 0.89029 0.90928 0.81928 0.83870 0.84172 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.78 13.50 21.45 0.29 -57.49 16 2 C -0.03 -1.81 5.36 84.66 0.45 -1.36 16 3 Si 1.10 52.85 29.90 68.60 2.05 54.90 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 7 C -0.59 -32.07 7.64 25.60 0.20 -31.88 16 8 H 0.07 3.98 4.40 -2.91 -0.01 3.97 16 9 C 0.01 0.47 2.44 -10.82 -0.03 0.45 16 10 H 0.00 -0.09 7.75 -2.39 -0.02 -0.10 16 11 C -0.11 -4.55 5.57 31.67 0.18 -4.37 16 12 C -0.11 -3.53 6.91 31.89 0.22 -3.31 16 13 C -0.12 -3.62 6.41 31.67 0.20 -3.42 16 14 C 0.13 5.10 3.62 45.72 0.17 5.26 16 15 H 0.09 3.12 8.12 -2.39 -0.02 3.10 16 16 N -0.41 -16.34 1.54 -498.24 -0.77 -17.10 16 17 C -0.03 -1.15 11.16 83.21 0.93 -0.22 16 18 C -0.22 -8.18 10.86 22.14 0.24 -7.94 16 19 C -0.24 -8.80 10.86 22.14 0.24 -8.56 16 20 C 0.00 0.01 8.02 83.21 0.67 0.68 16 21 H 0.26 15.74 5.76 -92.71 -0.53 15.20 16 22 H 0.04 1.75 7.85 -2.39 -0.02 1.73 16 23 H 0.03 1.51 7.17 -2.38 -0.02 1.49 16 24 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 27 H 0.07 2.26 6.22 -2.39 -0.01 2.25 16 28 H 0.16 5.39 8.06 -2.91 -0.02 5.37 16 29 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 30 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.15 5.65 7.23 -2.91 -0.02 5.63 16 Total: -1.00 -63.88 248.19 6.37 -57.51 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 1.34 Total: 16.85 kcal Atomic # 6 Polarization: -58.13 SS G_CDS: 3.47 Total: -54.67 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -0.48 Total: -74.59 kcal Atomic # 14 Polarization: 52.85 SS G_CDS: 2.05 Total: 54.90 kcal Total: -63.88 6.37 -57.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.704 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds