Wall clock time and date at job start Mon Mar 30 2020 02:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86789 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47325 * 299.99962 * 3 2 1 6 6 H 1.48503 * 109.47216 * 59.99838 * 3 2 1 7 7 C 1.37878 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00185 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.01560 * 58.60779 * 9 7 2 11 11 C 1.54264 * 110.07381 * 297.18999 * 9 7 2 12 12 C 1.54890 * 104.19723 * 217.08395 * 11 9 7 13 13 C 1.55020 * 102.75420 * 37.95390 * 12 11 9 14 14 C 1.53872 * 110.03087 * 179.97438 * 9 7 2 15 15 H 1.09001 * 110.03776 * 359.97438 * 14 9 7 16 16 N 1.46505 * 110.03175 * 238.61945 * 14 9 7 17 17 C 1.36349 * 125.63298 * 300.95198 * 16 14 9 18 18 C 1.34847 * 108.21761 * 180.14942 * 17 16 14 19 19 C 1.40896 * 107.41771 * 359.63274 * 18 17 16 20 20 C 1.34849 * 107.41486 * 0.22942 * 19 18 17 21 21 H 0.96998 * 120.00127 * 359.97438 * 1 2 3 22 22 H 1.09008 * 110.48416 * 335.75728 * 11 9 7 23 23 H 1.08990 * 110.49008 * 98.40326 * 11 9 7 24 24 H 1.08999 * 110.75933 * 156.25444 * 12 11 9 25 25 H 1.09000 * 110.75938 * 279.44204 * 12 11 9 26 26 H 1.09000 * 110.52034 * 203.39150 * 13 12 11 27 27 H 1.08998 * 110.50824 * 80.70374 * 13 12 11 28 28 H 1.07999 * 125.89149 * 0.02562 * 17 16 14 29 29 H 1.08002 * 126.29438 * 179.90446 * 18 17 16 30 30 H 1.07997 * 126.29281 * 180.26348 * 19 18 17 31 31 H 1.08004 * 125.89347 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6027 -2.5557 -0.8740 11 6 0.4123 -2.6264 1.2890 12 6 0.5034 -4.1287 1.6548 13 6 1.9682 -4.4816 1.2901 14 6 2.2393 -3.6785 0.0005 15 1 3.2641 -3.3069 0.0001 16 7 2.0124 -4.5235 -1.1746 17 6 0.8456 -5.1577 -1.4835 18 6 1.0274 -5.8384 -2.6333 19 6 2.3525 -5.6094 -3.0540 20 6 2.9314 -4.8016 -2.1425 21 1 -0.4850 0.8400 0.0004 22 1 0.8386 -2.0138 2.0836 23 1 -0.6227 -2.3418 1.1003 24 1 0.3238 -4.2787 2.7194 25 1 -0.1977 -4.7143 1.0601 26 1 2.0681 -5.5505 1.1017 27 1 2.6456 -4.1682 2.0844 28 1 -0.0662 -5.1228 -0.9058 29 1 0.2912 -6.4439 -3.1410 30 1 2.8186 -6.0071 -3.9433 31 1 3.9476 -4.4373 -2.1740 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260911890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:54 Heat of formation + Delta-G solvation = 34.196008 kcal Electronic energy + Delta-G solvation = -13421.281092 eV Core-core repulsion = 11281.811363 eV Total energy + Delta-G solvation = -2139.469729 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.59154 -36.97300 -32.63128 -30.88452 -28.33295 -28.07173 -26.58191 -23.98305 -20.53802 -19.96180 -19.59730 -18.57698 -16.73958 -16.19859 -14.58307 -14.40891 -13.95874 -13.36367 -13.13018 -12.57713 -12.37099 -11.77010 -11.75098 -11.44888 -11.11746 -10.92863 -10.64666 -10.50648 -10.29630 -10.04024 -9.78759 -9.62856 -8.92342 -8.48197 -7.83247 -7.49781 -6.10851 -4.14934 3.02092 3.24213 3.32657 3.35485 3.65459 3.78917 4.36738 5.19418 5.36518 5.48537 5.58250 5.73166 5.83997 5.97136 6.14007 6.21762 6.29812 6.40020 6.52469 6.59120 6.62810 6.85346 6.94676 7.05514 7.15990 7.57652 7.65261 7.69996 7.86099 7.99432 8.16109 8.30551 8.85990 9.49302 10.98739 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.035582 B = 0.010808 C = 0.009513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.733706 B = 2590.151467 C = 2942.568139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.043 3.957 10 H 0.041 0.959 11 C -0.093 4.093 12 C -0.134 4.134 13 C -0.128 4.128 14 C 0.124 3.876 15 H 0.090 0.910 16 N -0.420 5.420 17 C -0.002 4.002 18 C -0.223 4.223 19 C -0.218 4.218 20 C -0.017 4.017 21 H 0.261 0.739 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.152 0.848 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 -7.727 0.551 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.024 3.976 10 H 0.059 0.941 11 C -0.132 4.132 12 C -0.171 4.171 13 C -0.166 4.166 14 C 0.023 3.977 15 H 0.108 0.892 16 N -0.092 5.092 17 C -0.134 4.134 18 C -0.247 4.247 19 C -0.243 4.243 20 C -0.149 4.149 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.170 0.830 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.453 -7.367 0.873 7.814 hybrid contribution 0.421 1.023 -0.076 1.109 sum 2.875 -6.344 0.796 7.010 Atomic orbital electron populations 1.69975 1.05900 1.26598 1.49812 1.24950 0.94873 0.99119 0.94836 0.86537 0.80114 0.83737 0.77650 1.19757 1.20955 1.20957 1.21159 0.92624 0.90180 1.51774 0.92541 1.19636 0.92220 0.90479 0.95281 0.94130 1.22316 1.00866 0.91083 0.98913 1.22719 0.95194 0.99664 0.99553 1.22700 0.98277 0.98684 0.96913 1.22670 1.02505 0.90822 0.81712 0.89177 1.44594 1.09707 1.35961 1.18972 1.21698 0.91116 1.00855 0.99731 1.20721 0.97519 1.07655 0.98825 1.20691 0.95907 1.06262 1.01427 1.21744 0.95963 1.04759 0.92435 0.92944 0.92495 0.92120 0.92836 0.92634 0.92340 0.90837 0.83021 0.85759 0.85789 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 12.43 55.43 0.69 -24.33 16 2 C 0.06 1.76 5.33 -17.82 -0.09 1.67 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -13.82 8.37 -34.44 -0.29 -14.11 16 8 H 0.06 1.48 7.33 -52.49 -0.38 1.10 16 9 C 0.04 1.03 2.40 -90.66 -0.22 0.81 16 10 H 0.04 1.11 7.48 -51.93 -0.39 0.72 16 11 C -0.09 -2.09 5.44 -25.07 -0.14 -2.22 16 12 C -0.13 -2.40 6.69 -24.67 -0.17 -2.56 16 13 C -0.13 -2.23 6.21 -24.97 -0.16 -2.39 16 14 C 0.12 2.52 3.27 -66.78 -0.22 2.30 16 15 H 0.09 1.83 7.31 -51.93 -0.38 1.45 16 16 N -0.42 -8.27 2.55 -108.80 -0.28 -8.55 16 17 C 0.00 -0.03 10.09 -16.75 -0.17 -0.20 16 18 C -0.22 -3.99 10.86 -39.78 -0.43 -4.42 16 19 C -0.22 -3.84 10.86 -39.78 -0.43 -4.28 16 20 C -0.02 -0.32 11.40 -16.75 -0.19 -0.51 16 21 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 22 H 0.06 1.34 7.85 -51.92 -0.41 0.93 16 23 H 0.06 1.45 7.97 -51.93 -0.41 1.04 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.95 6.68 -51.93 -0.35 0.61 16 26 H 0.06 0.96 8.04 -51.93 -0.42 0.55 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.15 2.72 6.63 -52.49 -0.35 2.37 16 29 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.15 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 254.80 15.07 3.84 3.84 Total: -1.00 -28.18 254.80 -7.60 -35.78 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.33 Total: 3.21 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -2.50 Total: -25.92 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.41 Total: -32.88 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.18 -7.60 -35.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.977 kcal (2) G-P(sol) polarization free energy of solvation -28.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds