Wall clock time and date at job start Mon Mar 30 2020 02:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86789 * 120.00058 * 2 1 4 4 H 1.48503 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47325 * 299.99962 * 3 2 1 6 6 H 1.48503 * 109.47216 * 59.99838 * 3 2 1 7 7 C 1.37878 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00185 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.01560 * 58.60779 * 9 7 2 11 11 C 1.54264 * 110.07381 * 297.18999 * 9 7 2 12 12 C 1.54890 * 104.19723 * 217.08395 * 11 9 7 13 13 C 1.55020 * 102.75420 * 37.95390 * 12 11 9 14 14 C 1.53872 * 110.03087 * 179.97438 * 9 7 2 15 15 H 1.09001 * 110.03776 * 359.97438 * 14 9 7 16 16 N 1.46505 * 110.03175 * 238.61945 * 14 9 7 17 17 C 1.36349 * 125.63298 * 300.95198 * 16 14 9 18 18 C 1.34847 * 108.21761 * 180.14942 * 17 16 14 19 19 C 1.40896 * 107.41771 * 359.63274 * 18 17 16 20 20 C 1.34849 * 107.41486 * 0.22942 * 19 18 17 21 21 H 0.96998 * 120.00127 * 359.97438 * 1 2 3 22 22 H 1.09008 * 110.48416 * 335.75728 * 11 9 7 23 23 H 1.08990 * 110.49008 * 98.40326 * 11 9 7 24 24 H 1.08999 * 110.75933 * 156.25444 * 12 11 9 25 25 H 1.09000 * 110.75938 * 279.44204 * 12 11 9 26 26 H 1.09000 * 110.52034 * 203.39150 * 13 12 11 27 27 H 1.08998 * 110.50824 * 80.70374 * 13 12 11 28 28 H 1.07999 * 125.89149 * 0.02562 * 17 16 14 29 29 H 1.08002 * 126.29438 * 179.90446 * 18 17 16 30 30 H 1.07997 * 126.29281 * 180.26348 * 19 18 17 31 31 H 1.08004 * 125.89347 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6027 -2.5557 -0.8740 11 6 0.4123 -2.6264 1.2890 12 6 0.5034 -4.1287 1.6548 13 6 1.9682 -4.4816 1.2901 14 6 2.2393 -3.6785 0.0005 15 1 3.2641 -3.3069 0.0001 16 7 2.0124 -4.5235 -1.1746 17 6 0.8456 -5.1577 -1.4835 18 6 1.0274 -5.8384 -2.6333 19 6 2.3525 -5.6094 -3.0540 20 6 2.9314 -4.8016 -2.1425 21 1 -0.4850 0.8400 0.0004 22 1 0.8386 -2.0138 2.0836 23 1 -0.6227 -2.3418 1.1003 24 1 0.3238 -4.2787 2.7194 25 1 -0.1977 -4.7143 1.0601 26 1 2.0681 -5.5505 1.1017 27 1 2.6456 -4.1682 2.0844 28 1 -0.0662 -5.1228 -0.9058 29 1 0.2912 -6.4439 -3.1410 30 1 2.8186 -6.0071 -3.9433 31 1 3.9476 -4.4373 -2.1740 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260911890.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:54 Heat of formation + Delta-G solvation = 20.325117 kcal Electronic energy + Delta-G solvation = -13421.882579 eV Core-core repulsion = 11281.811363 eV Total energy + Delta-G solvation = -2140.071216 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.04608 -38.60879 -34.63036 -32.39043 -30.16123 -29.49406 -28.15386 -25.90642 -22.06008 -21.52752 -21.11270 -20.13245 -18.58131 -17.90791 -16.51877 -15.91378 -15.58797 -14.99325 -14.57744 -14.11615 -14.06126 -13.56716 -13.12054 -13.00846 -12.81628 -12.76958 -12.41540 -12.12640 -11.86900 -11.69602 -11.49312 -11.43893 -10.89887 -10.54526 -9.29992 -8.92433 -8.18270 -6.28747 1.37044 1.39397 1.49794 1.57219 2.26548 2.29542 2.42284 3.13796 3.78003 3.93706 4.14179 4.29857 4.45776 4.51783 4.66813 4.84799 4.84956 4.89762 4.92679 4.98626 5.09761 5.30298 5.41890 5.49067 5.55518 5.58979 5.80514 5.87212 6.22985 6.27876 6.56273 6.71419 6.81951 7.38806 8.90810 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.035582 B = 0.010808 C = 0.009513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.733706 B = 2590.151467 C = 2942.568139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.041 3.959 10 H -0.002 1.002 11 C -0.087 4.087 12 C -0.122 4.122 13 C -0.116 4.116 14 C 0.129 3.871 15 H 0.087 0.913 16 N -0.431 5.431 17 C -0.024 4.024 18 C -0.225 4.225 19 C -0.220 4.220 20 C -0.035 4.035 21 H 0.261 0.739 22 H 0.040 0.960 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.155 0.845 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -8.666 0.738 9.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.016 0.984 11 C -0.125 4.125 12 C -0.159 4.159 13 C -0.154 4.154 14 C 0.027 3.973 15 H 0.105 0.895 16 N -0.105 5.105 17 C -0.155 4.155 18 C -0.250 4.250 19 C -0.245 4.245 20 C -0.166 4.166 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.172 0.828 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.534 -8.321 1.056 9.102 hybrid contribution 0.067 1.305 -0.206 1.322 sum 3.601 -7.017 0.850 7.932 Atomic orbital electron populations 1.70101 1.07284 1.27266 1.50929 1.25734 0.95643 1.02462 0.94702 0.85565 0.79238 0.79721 0.77532 1.18830 1.21063 1.20413 1.21560 0.92892 0.91618 1.51125 0.92528 1.19529 0.92515 0.91478 0.94254 0.98353 1.22094 0.98585 0.94258 0.97602 1.22631 0.95965 0.95982 1.01314 1.22651 0.97928 0.99198 0.95657 1.22444 1.00952 0.90247 0.83614 0.89458 1.44614 1.10344 1.36282 1.19250 1.21955 0.91284 1.01594 1.00704 1.21098 0.98251 1.07271 0.98345 1.21074 0.95785 1.05678 1.01924 1.22233 0.96834 1.05166 0.92357 0.93031 0.94133 0.94874 0.90211 0.91920 0.90624 0.89312 0.82760 0.83563 0.83254 0.81359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.13 12.43 21.45 0.27 -52.87 16 2 C 0.01 0.76 5.33 84.65 0.45 1.22 16 3 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -28.78 8.37 25.60 0.21 -28.57 16 8 H 0.06 2.97 7.33 -2.91 -0.02 2.95 16 9 C 0.04 2.02 2.40 -10.82 -0.03 1.99 16 10 H 0.00 -0.09 7.48 -2.39 -0.02 -0.11 16 11 C -0.09 -3.93 5.44 31.67 0.17 -3.76 16 12 C -0.12 -4.16 6.69 31.93 0.21 -3.95 16 13 C -0.12 -3.81 6.21 31.73 0.20 -3.61 16 14 C 0.13 5.14 3.27 45.73 0.15 5.29 16 15 H 0.09 3.48 7.31 -2.39 -0.02 3.46 16 16 N -0.43 -16.61 2.55 -498.13 -1.27 -17.88 16 17 C -0.02 -0.89 10.09 83.21 0.84 -0.05 16 18 C -0.23 -7.66 10.86 22.14 0.24 -7.42 16 19 C -0.22 -7.28 10.86 22.14 0.24 -7.04 16 20 C -0.03 -1.23 11.40 83.21 0.95 -0.28 16 21 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 22 H 0.04 1.92 7.85 -2.38 -0.02 1.90 16 23 H 0.03 1.63 7.97 -2.39 -0.02 1.62 16 24 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.06 2.06 6.68 -2.39 -0.02 2.04 16 26 H 0.08 2.26 8.04 -2.39 -0.02 2.24 16 27 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.15 5.47 6.63 -2.91 -0.02 5.45 16 29 H 0.15 4.20 8.06 -2.91 -0.02 4.17 16 30 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 31 H 0.17 5.13 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -60.53 254.80 5.76 -54.78 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.09 Total: 16.85 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 3.64 Total: -46.18 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -1.00 Total: -70.75 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -60.53 5.76 -54.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911890.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.100 kcal (2) G-P(sol) polarization free energy of solvation -60.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds