Wall clock time and date at job start Mon Mar 30 2020 02:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99778 * 2 1 4 4 H 1.48498 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47333 * 300.00250 * 3 2 1 6 6 H 1.48503 * 109.47447 * 60.00401 * 3 2 1 7 7 C 1.37875 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99665 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00178 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.05371 * 301.41590 * 9 7 2 11 11 C 1.53870 * 110.02888 * 62.83466 * 9 7 2 12 12 C 1.54269 * 106.59667 * 119.28773 * 11 9 7 13 13 C 1.54886 * 104.19721 * 23.60504 * 12 11 9 14 14 H 1.09004 * 110.91589 * 80.44681 * 13 12 11 15 15 N 1.46500 * 110.75739 * 203.74408 * 13 12 11 16 16 C 1.36341 * 125.63430 * 53.02361 * 15 13 12 17 17 C 1.34856 * 108.21893 * 180.26273 * 16 15 13 18 18 C 1.40893 * 107.41387 * 359.97438 * 17 16 15 19 19 C 1.34845 * 107.42021 * 0.02562 * 18 17 16 20 20 C 1.54268 * 110.03109 * 180.02562 * 9 7 2 21 21 H 0.96996 * 119.99728 * 359.97438 * 1 2 3 22 22 H 1.09008 * 110.03055 * 238.56888 * 11 9 7 23 23 H 1.08996 * 110.03623 * 359.95317 * 11 9 7 24 24 H 1.09004 * 110.48417 * 264.92559 * 12 11 9 25 25 H 1.08999 * 110.48738 * 142.28826 * 12 11 9 26 26 H 1.07998 * 125.89441 * 0.22555 * 16 15 13 27 27 H 1.07999 * 126.28963 * 179.97438 * 17 16 15 28 28 H 1.07995 * 126.28880 * 179.97438 * 18 17 16 29 29 H 1.08006 * 125.89233 * 180.02562 * 19 18 17 30 30 H 1.09002 * 110.48210 * 98.42654 * 20 9 7 31 31 H 1.08999 * 110.59995 * 335.84245 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6023 -2.5562 0.8736 11 6 0.4155 -2.6253 -1.2864 12 6 0.9277 -3.8799 -2.0235 13 6 1.5679 -4.7416 -0.9070 14 1 0.8060 -5.2926 -0.3556 15 7 2.5657 -5.6574 -1.4656 16 6 3.6116 -5.3012 -2.2644 17 6 4.3008 -6.4169 -2.5791 18 6 3.6570 -7.5014 -1.9510 19 6 2.5988 -7.0073 -1.2770 20 6 2.2420 -3.6815 -0.0005 21 1 -0.4849 0.8400 0.0004 22 1 -0.6389 -2.7436 -1.0364 23 1 0.5543 -1.7422 -1.9101 24 1 1.6741 -3.6061 -2.7693 25 1 0.0994 -4.4134 -2.4896 26 1 3.8472 -4.2987 -2.5897 27 1 5.1838 -6.4693 -3.1987 28 1 3.9557 -8.5380 -2.0010 29 1 1.8985 -7.5817 -0.6886 30 1 2.3724 -4.0699 1.0096 31 1 3.2019 -3.3774 -0.4181 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260964737.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:56 Heat of formation + Delta-G solvation = 32.285188 kcal Electronic energy + Delta-G solvation = -13133.386776 eV Core-core repulsion = 10993.834188 eV Total energy + Delta-G solvation = -2139.552588 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.78554 -37.07871 -32.85522 -30.83632 -28.42789 -28.23636 -26.65658 -23.94640 -21.11992 -19.98396 -19.13968 -18.85588 -17.17973 -15.89551 -14.84192 -14.59587 -13.84924 -13.48918 -13.36492 -12.54227 -12.53923 -12.03927 -11.71418 -11.67915 -11.17343 -10.93482 -10.66230 -10.56904 -10.44958 -10.06024 -9.77753 -9.40105 -8.80647 -8.45163 -8.09815 -7.76903 -6.07853 -4.11421 2.72469 3.25756 3.34386 3.37935 3.40775 3.46300 4.39163 5.16996 5.22143 5.39019 5.39721 5.59097 5.64132 5.84886 5.94196 6.14865 6.33278 6.35227 6.43785 6.59567 6.62544 6.70762 6.82213 7.07602 7.20041 7.38772 7.60831 7.70179 7.77429 7.88353 7.90581 8.37126 8.91839 9.53253 11.01491 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.057640 B = 0.007967 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.657174 B = 3513.735723 C = 3744.225042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.047 3.953 10 H 0.031 0.969 11 C -0.091 4.091 12 C -0.129 4.129 13 C 0.118 3.882 14 H 0.095 0.905 15 N -0.428 5.428 16 C -0.002 4.002 17 C -0.218 4.218 18 C -0.213 4.213 19 C -0.023 4.023 20 C -0.118 4.118 21 H 0.260 0.740 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.157 0.843 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.153 0.847 30 H 0.051 0.949 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 -9.222 -3.011 10.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.028 3.972 10 H 0.049 0.951 11 C -0.130 4.130 12 C -0.167 4.167 13 C 0.016 3.984 14 H 0.113 0.887 15 N -0.101 5.101 16 C -0.134 4.134 17 C -0.242 4.242 18 C -0.237 4.237 19 C -0.155 4.155 20 C -0.157 4.157 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.174 0.826 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.171 0.829 30 H 0.070 0.930 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.479 -8.853 -2.852 9.626 hybrid contribution 0.391 0.912 0.002 0.992 sum 2.870 -7.941 -2.850 8.911 Atomic orbital electron populations 1.69984 1.05878 1.26499 1.50382 1.24985 0.94860 0.99112 0.95112 0.86574 0.80211 0.83868 0.77618 1.19758 1.21011 1.21006 1.21249 0.92810 0.90284 1.50841 0.92556 1.19229 0.92328 0.91575 0.94056 0.95093 1.22073 0.98234 0.94297 0.98395 1.22792 0.99447 0.97549 0.96949 1.22794 0.89362 0.90089 0.96158 0.88725 1.44469 1.21903 1.06520 1.37225 1.21760 0.91750 0.99741 1.00149 1.20780 1.03124 0.92526 1.07801 1.20755 0.99071 0.98573 1.05344 1.21775 1.02891 0.83639 1.07153 1.22880 1.00459 0.95314 0.97008 0.93034 0.93876 0.91223 0.91689 0.92835 0.82555 0.85420 0.85523 0.82915 0.93036 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 12.44 55.43 0.69 -24.28 16 2 C 0.06 1.65 5.09 -17.82 -0.09 1.56 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -13.69 8.32 -34.44 -0.29 -13.98 16 8 H 0.06 1.50 7.54 -52.49 -0.40 1.10 16 9 C 0.05 1.12 2.82 -90.65 -0.26 0.86 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.09 -2.03 5.60 -25.61 -0.14 -2.17 16 12 C -0.13 -2.38 6.39 -25.07 -0.16 -2.54 16 13 C 0.12 2.07 3.63 -65.92 -0.24 1.83 16 14 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 15 N -0.43 -7.24 2.74 -107.89 -0.30 -7.54 16 16 C 0.00 -0.04 9.87 -16.75 -0.17 -0.20 16 17 C -0.22 -3.41 10.86 -39.78 -0.43 -3.84 16 18 C -0.21 -3.21 10.86 -39.78 -0.43 -3.64 16 19 C -0.02 -0.36 11.41 -16.75 -0.19 -0.55 16 20 C -0.12 -2.39 5.95 -25.05 -0.15 -2.54 16 21 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 22 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 23 H 0.07 1.72 7.26 -51.93 -0.38 1.35 16 24 H 0.06 1.20 7.22 -51.93 -0.38 0.82 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.16 2.50 7.86 -52.49 -0.41 2.09 16 27 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.39 7.11 -51.93 -0.37 1.02 16 LS Contribution 257.00 15.07 3.87 3.87 Total: -1.00 -27.85 257.00 -7.74 -35.60 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.44 Total: 1.63 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.55 Total: -25.20 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.39 Total: -31.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.85 -7.74 -35.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260964737.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.883 kcal (2) G-P(sol) polarization free energy of solvation -27.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds