Wall clock time and date at job start Mon Mar 30 2020 02:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99778 * 2 1 4 4 H 1.48498 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47333 * 300.00250 * 3 2 1 6 6 H 1.48503 * 109.47447 * 60.00401 * 3 2 1 7 7 C 1.37875 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99665 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00178 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.05371 * 301.41590 * 9 7 2 11 11 C 1.53870 * 110.02888 * 62.83466 * 9 7 2 12 12 C 1.54269 * 106.59667 * 119.28773 * 11 9 7 13 13 C 1.54886 * 104.19721 * 23.60504 * 12 11 9 14 14 H 1.09004 * 110.91589 * 80.44681 * 13 12 11 15 15 N 1.46500 * 110.75739 * 203.74408 * 13 12 11 16 16 C 1.36341 * 125.63430 * 53.02361 * 15 13 12 17 17 C 1.34856 * 108.21893 * 180.26273 * 16 15 13 18 18 C 1.40893 * 107.41387 * 359.97438 * 17 16 15 19 19 C 1.34845 * 107.42021 * 0.02562 * 18 17 16 20 20 C 1.54268 * 110.03109 * 180.02562 * 9 7 2 21 21 H 0.96996 * 119.99728 * 359.97438 * 1 2 3 22 22 H 1.09008 * 110.03055 * 238.56888 * 11 9 7 23 23 H 1.08996 * 110.03623 * 359.95317 * 11 9 7 24 24 H 1.09004 * 110.48417 * 264.92559 * 12 11 9 25 25 H 1.08999 * 110.48738 * 142.28826 * 12 11 9 26 26 H 1.07998 * 125.89441 * 0.22555 * 16 15 13 27 27 H 1.07999 * 126.28963 * 179.97438 * 17 16 15 28 28 H 1.07995 * 126.28880 * 179.97438 * 18 17 16 29 29 H 1.08006 * 125.89233 * 180.02562 * 19 18 17 30 30 H 1.09002 * 110.48210 * 98.42654 * 20 9 7 31 31 H 1.08999 * 110.59995 * 335.84245 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6023 -2.5562 0.8736 11 6 0.4155 -2.6253 -1.2864 12 6 0.9277 -3.8799 -2.0235 13 6 1.5679 -4.7416 -0.9070 14 1 0.8060 -5.2926 -0.3556 15 7 2.5657 -5.6574 -1.4656 16 6 3.6116 -5.3012 -2.2644 17 6 4.3008 -6.4169 -2.5791 18 6 3.6570 -7.5014 -1.9510 19 6 2.5988 -7.0073 -1.2770 20 6 2.2420 -3.6815 -0.0005 21 1 -0.4849 0.8400 0.0004 22 1 -0.6389 -2.7436 -1.0364 23 1 0.5543 -1.7422 -1.9101 24 1 1.6741 -3.6061 -2.7693 25 1 0.0994 -4.4134 -2.4896 26 1 3.8472 -4.2987 -2.5897 27 1 5.1838 -6.4693 -3.1987 28 1 3.9557 -8.5380 -2.0010 29 1 1.8985 -7.5817 -0.6886 30 1 2.3724 -4.0699 1.0096 31 1 3.2019 -3.3774 -0.4181 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260964737.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:56 Heat of formation + Delta-G solvation = 18.859425 kcal Electronic energy + Delta-G solvation = -13133.968961 eV Core-core repulsion = 10993.834188 eV Total energy + Delta-G solvation = -2140.134773 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.03168 -38.71372 -34.76074 -32.37066 -30.00843 -29.57573 -28.28357 -25.83465 -22.53450 -21.17002 -20.97574 -20.17241 -18.75892 -17.68832 -16.56617 -16.40565 -15.15829 -15.00200 -14.68705 -14.28790 -14.04848 -13.63372 -13.06041 -13.01607 -12.88546 -12.71940 -12.38157 -12.26901 -12.09624 -11.74895 -11.58996 -11.21027 -10.78258 -10.50513 -9.37237 -8.96900 -8.15901 -6.25441 1.37885 1.40698 1.49089 1.51385 2.16718 2.23763 2.41520 3.15369 3.75151 3.83849 4.04860 4.23343 4.46124 4.50944 4.66352 4.70659 4.80933 4.84272 4.90277 4.97341 5.04680 5.34106 5.37041 5.46795 5.54530 5.62297 5.87013 5.89359 6.22138 6.34833 6.48161 6.63277 6.85445 7.42308 8.93068 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.057640 B = 0.007967 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.657174 B = 3513.735723 C = 3744.225042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.530 4.530 8 H 0.050 0.950 9 C 0.040 3.960 10 H 0.004 0.996 11 C -0.082 4.082 12 C -0.117 4.117 13 C 0.132 3.868 14 H 0.115 0.885 15 N -0.437 5.437 16 C -0.029 4.029 17 C -0.219 4.219 18 C -0.219 4.219 19 C -0.028 4.028 20 C -0.109 4.109 21 H 0.261 0.739 22 H 0.035 0.965 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.154 0.846 27 H 0.145 0.855 28 H 0.151 0.849 29 H 0.180 0.820 30 H 0.057 0.943 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -10.558 -3.346 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.021 3.979 10 H 0.022 0.978 11 C -0.121 4.121 12 C -0.155 4.155 13 C 0.030 3.970 14 H 0.133 0.867 15 N -0.111 5.111 16 C -0.160 4.160 17 C -0.244 4.244 18 C -0.243 4.243 19 C -0.158 4.158 20 C -0.147 4.147 21 H 0.070 0.930 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.171 0.829 27 H 0.163 0.837 28 H 0.169 0.831 29 H 0.197 0.803 30 H 0.076 0.924 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.127 -10.204 -3.194 11.140 hybrid contribution 0.220 1.293 0.116 1.317 sum 3.348 -8.911 -3.078 10.004 Atomic orbital electron populations 1.70086 1.07109 1.27242 1.51246 1.25710 0.95651 1.02284 0.94911 0.85623 0.79117 0.80010 0.77652 1.19287 1.20590 1.20625 1.21593 0.92809 0.91890 1.50569 0.93126 1.19202 0.92812 0.92228 0.93663 0.97817 1.21823 0.97663 0.95053 0.97516 1.22639 1.00089 0.95964 0.96853 1.22532 0.89521 0.89829 0.95126 0.86682 1.44415 1.21912 1.07020 1.37792 1.21940 0.92555 1.00243 1.01233 1.21119 1.03383 0.92399 1.07465 1.21128 0.98759 0.99625 1.04787 1.22328 1.03456 0.82978 1.07048 1.22671 0.99039 0.94890 0.98130 0.92999 0.94627 0.94408 0.91888 0.90587 0.82873 0.83726 0.83140 0.80251 0.92402 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.52 12.44 21.45 0.27 -52.26 16 2 C 0.01 0.74 5.09 84.65 0.43 1.17 16 3 Si 0.95 43.33 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.53 -28.81 8.32 25.60 0.21 -28.59 16 8 H 0.05 2.73 7.54 -2.91 -0.02 2.71 16 9 C 0.04 1.93 2.82 -10.81 -0.03 1.90 16 10 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 11 C -0.08 -3.68 5.60 31.32 0.18 -3.50 16 12 C -0.12 -4.18 6.39 31.67 0.20 -3.98 16 13 C 0.13 4.40 3.63 46.29 0.17 4.57 16 14 H 0.12 3.41 8.10 -2.39 -0.02 3.39 16 15 N -0.44 -13.80 2.74 -495.25 -1.36 -15.16 16 16 C -0.03 -0.93 9.87 83.22 0.82 -0.11 16 17 C -0.22 -6.33 10.86 22.14 0.24 -6.09 16 18 C -0.22 -5.88 10.86 22.14 0.24 -5.64 16 19 C -0.03 -0.77 11.41 83.21 0.95 0.18 16 20 C -0.11 -4.35 5.95 31.68 0.19 -4.16 16 21 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 22 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.04 1.91 7.26 -2.39 -0.02 1.89 16 24 H 0.06 2.27 7.22 -2.38 -0.02 2.25 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.15 4.83 7.86 -2.91 -0.02 4.81 16 27 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.18 3.83 8.06 -2.91 -0.02 3.80 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 2.32 7.11 -2.39 -0.02 2.30 16 Total: -1.00 -59.18 257.00 5.62 -53.56 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.09 Total: 12.75 kcal Atomic # 6 Polarization: -47.85 SS G_CDS: 3.60 Total: -44.25 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -1.09 Total: -67.42 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -59.18 5.62 -53.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260964737.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.421 kcal (2) G-P(sol) polarization free energy of solvation -59.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds