Wall clock time and date at job start Mon Mar 30 2020 02:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48508 * 109.46693 * 269.99671 * 3 2 1 5 5 H 1.48498 * 109.47277 * 29.99459 * 3 2 1 6 6 H 1.48496 * 109.47532 * 149.99827 * 3 2 1 7 7 C 1.37880 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00164 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99792 * 180.02562 * 7 2 1 10 10 H 1.09007 * 110.43017 * 57.46578 * 9 7 2 11 11 C 1.55238 * 110.46892 * 294.81409 * 9 7 2 12 12 C 1.54894 * 102.58338 * 203.39217 * 11 9 7 13 13 C 1.54266 * 104.31305 * 37.93170 * 12 11 9 14 14 H 1.09004 * 110.03005 * 95.65211 * 13 12 11 15 15 N 1.46494 * 110.03259 * 217.03573 * 13 12 11 16 16 C 1.36344 * 125.63529 * 58.24233 * 15 13 12 17 17 C 1.34860 * 108.21838 * 179.82949 * 16 15 13 18 18 C 1.40890 * 107.41250 * 0.42657 * 17 16 15 19 19 C 1.34848 * 107.42013 * 359.73418 * 18 17 16 20 20 C 1.53869 * 106.60031 * 336.32486 * 13 12 11 21 21 H 0.96998 * 119.99479 * 0.02562 * 1 2 3 22 22 H 1.08996 * 110.89448 * 85.10781 * 11 9 7 23 23 H 1.08993 * 110.76342 * 321.62447 * 11 9 7 24 24 H 1.09002 * 110.48891 * 279.18596 * 12 11 9 25 25 H 1.08998 * 110.48494 * 156.67683 * 12 11 9 26 26 H 1.08000 * 125.89314 * 359.95638 * 16 15 13 27 27 H 1.07998 * 126.29052 * 180.15843 * 17 16 15 28 28 H 1.08004 * 126.28762 * 179.73803 * 18 17 16 29 29 H 1.08001 * 125.88476 * 180.02562 * 19 18 17 30 30 H 1.08999 * 110.04012 * 119.28327 * 20 13 12 31 31 H 1.09006 * 110.02998 * 240.67078 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8918 -0.6446 0.8623 11 6 4.0550 -0.5841 -1.3189 12 6 5.4729 -1.1998 -1.4167 13 6 5.2985 -2.6428 -0.8998 14 1 5.1523 -3.3244 -1.7378 15 7 6.4758 -3.0445 -0.1262 16 6 6.9520 -2.4100 0.9827 17 6 8.0430 -3.0755 1.4134 18 6 8.2536 -4.1547 0.5325 19 6 7.2799 -4.1111 -0.3994 20 6 4.0514 -2.6392 0.0015 21 1 -0.4849 0.8401 -0.0004 22 1 4.1095 0.5025 -1.2515 23 1 3.4419 -0.8893 -2.1668 24 1 6.1717 -0.6505 -0.7858 25 1 5.8165 -1.2040 -2.4511 26 1 6.5274 -1.5280 1.4389 27 1 8.6471 -2.8245 2.2728 28 1 9.0488 -4.8832 0.5927 29 1 7.1579 -4.8023 -1.2203 30 1 3.2992 -3.3189 -0.3988 31 1 4.3221 -2.9371 1.0146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260964742.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:04 Heat of formation + Delta-G solvation = 39.720458 kcal Electronic energy + Delta-G solvation = -13221.566629 eV Core-core repulsion = 11082.336458 eV Total energy + Delta-G solvation = -2139.230171 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.92974 -37.30086 -32.80913 -31.15949 -28.62226 -28.46436 -27.16572 -23.76386 -21.05666 -20.13473 -19.53911 -18.89086 -17.12312 -16.77972 -14.93471 -14.32317 -13.91576 -13.77943 -13.21369 -12.86976 -12.71024 -12.43932 -12.02410 -11.77467 -11.43628 -10.99587 -10.89948 -10.67004 -10.44093 -9.98356 -9.81399 -9.60134 -9.10964 -8.60457 -8.21907 -7.84544 -6.13187 -4.12794 2.63769 3.23119 3.32148 3.33661 3.33766 3.36497 4.36187 4.93152 5.06509 5.27770 5.29302 5.42983 5.55168 5.72588 5.83860 5.93599 6.07214 6.16114 6.18278 6.32725 6.51955 6.54653 6.61286 6.68326 6.78952 7.00035 7.31050 7.39410 7.60806 7.68115 7.78811 8.45430 8.90004 9.49097 10.99960 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.058082 B = 0.008644 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.964854 B = 3238.620679 C = 3330.637655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.014 3.986 10 H 0.033 0.967 11 C -0.128 4.128 12 C -0.132 4.132 13 C 0.124 3.876 14 H 0.093 0.907 15 N -0.432 5.432 16 C -0.003 4.003 17 C -0.216 4.216 18 C -0.211 4.211 19 C -0.022 4.022 20 C -0.115 4.115 21 H 0.264 0.736 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.156 0.844 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.073 0.927 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.784 -3.871 -1.570 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.005 4.005 10 H 0.051 0.949 11 C -0.166 4.166 12 C -0.170 4.170 13 C 0.023 3.977 14 H 0.111 0.889 15 N -0.105 5.105 16 C -0.135 4.135 17 C -0.240 4.240 18 C -0.236 4.236 19 C -0.153 4.153 20 C -0.153 4.153 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.174 0.826 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.172 0.828 30 H 0.092 0.908 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.294 -3.662 -1.778 12.950 hybrid contribution 0.379 0.922 -0.063 0.999 sum 12.673 -2.740 -1.840 13.096 Atomic orbital electron populations 1.69902 1.06296 1.26995 1.50630 1.25003 0.94658 0.99031 0.94358 0.86908 0.80121 0.83744 0.78380 1.20331 1.21976 1.18978 1.21037 0.88477 0.94479 1.51032 0.90795 1.20012 0.96768 0.90861 0.92815 0.94868 1.22997 0.93048 0.98812 1.01781 1.22783 0.99734 0.94158 1.00321 1.22388 0.84050 0.97203 0.94088 0.88911 1.44574 1.21924 1.21936 1.22115 1.21762 0.98555 1.01307 0.91845 1.20799 1.00609 0.99566 1.03029 1.20774 1.01855 1.02242 0.98740 1.21786 0.95398 0.94768 1.03370 1.22527 0.93902 1.00791 0.98070 0.92611 0.93003 0.90932 0.91407 0.91988 0.82614 0.85347 0.85441 0.82837 0.90787 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.25 24.65 -169.99 -4.19 17.06 16 4 H -0.28 -6.51 7.10 56.52 0.40 -6.11 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.12 6.47 56.52 0.37 -5.75 16 7 C -0.51 -13.91 9.05 -34.44 -0.31 -14.22 16 8 H 0.07 2.18 7.79 -52.49 -0.41 1.77 16 9 C 0.01 0.32 2.28 -89.92 -0.20 0.12 16 10 H 0.03 0.77 7.06 -51.93 -0.37 0.40 16 11 C -0.13 -2.57 5.32 -24.55 -0.13 -2.70 16 12 C -0.13 -2.18 6.45 -25.07 -0.16 -2.34 16 13 C 0.12 2.02 3.61 -66.82 -0.24 1.78 16 14 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 15 N -0.43 -6.88 2.61 -108.84 -0.28 -7.17 16 16 C 0.00 -0.05 9.78 -16.74 -0.16 -0.22 16 17 C -0.22 -3.24 10.86 -39.78 -0.43 -3.67 16 18 C -0.21 -3.05 10.86 -39.78 -0.43 -3.48 16 19 C -0.02 -0.33 11.40 -16.75 -0.19 -0.52 16 20 C -0.11 -2.19 5.95 -25.62 -0.15 -2.35 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.05 1.06 5.30 -51.93 -0.28 0.79 16 23 H 0.07 1.48 8.05 -51.93 -0.42 1.06 16 24 H 0.07 1.12 7.29 -51.93 -0.38 0.74 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.16 2.41 8.06 -52.49 -0.42 1.98 16 27 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.07 1.44 7.66 -51.93 -0.40 1.05 16 31 H 0.06 1.18 7.48 -51.93 -0.39 0.79 16 LS Contribution 250.31 15.07 3.77 3.77 Total: -1.00 -29.24 250.31 -6.79 -36.03 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.34 Total: 2.30 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -2.52 Total: -25.68 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.49 Total: -33.48 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.19 Total: 17.06 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.24 -6.79 -36.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260964742.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.747 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds