Wall clock time and date at job start Mon Mar 30 2020 02:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00137 * 2 1 4 4 H 1.48508 * 109.46693 * 269.99671 * 3 2 1 5 5 H 1.48498 * 109.47277 * 29.99459 * 3 2 1 6 6 H 1.48496 * 109.47532 * 149.99827 * 3 2 1 7 7 C 1.37880 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00164 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99792 * 180.02562 * 7 2 1 10 10 H 1.09007 * 110.43017 * 57.46578 * 9 7 2 11 11 C 1.55238 * 110.46892 * 294.81409 * 9 7 2 12 12 C 1.54894 * 102.58338 * 203.39217 * 11 9 7 13 13 C 1.54266 * 104.31305 * 37.93170 * 12 11 9 14 14 H 1.09004 * 110.03005 * 95.65211 * 13 12 11 15 15 N 1.46494 * 110.03259 * 217.03573 * 13 12 11 16 16 C 1.36344 * 125.63529 * 58.24233 * 15 13 12 17 17 C 1.34860 * 108.21838 * 179.82949 * 16 15 13 18 18 C 1.40890 * 107.41250 * 0.42657 * 17 16 15 19 19 C 1.34848 * 107.42013 * 359.73418 * 18 17 16 20 20 C 1.53869 * 106.60031 * 336.32486 * 13 12 11 21 21 H 0.96998 * 119.99479 * 0.02562 * 1 2 3 22 22 H 1.08996 * 110.89448 * 85.10781 * 11 9 7 23 23 H 1.08993 * 110.76342 * 321.62447 * 11 9 7 24 24 H 1.09002 * 110.48891 * 279.18596 * 12 11 9 25 25 H 1.08998 * 110.48494 * 156.67683 * 12 11 9 26 26 H 1.08000 * 125.89314 * 359.95638 * 16 15 13 27 27 H 1.07998 * 126.29052 * 180.15843 * 17 16 15 28 28 H 1.08004 * 126.28762 * 179.73803 * 18 17 16 29 29 H 1.08001 * 125.88476 * 180.02562 * 19 18 17 30 30 H 1.08999 * 110.04012 * 119.28327 * 20 13 12 31 31 H 1.09006 * 110.02998 * 240.67078 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8918 -0.6446 0.8623 11 6 4.0550 -0.5841 -1.3189 12 6 5.4729 -1.1998 -1.4167 13 6 5.2985 -2.6428 -0.8998 14 1 5.1523 -3.3244 -1.7378 15 7 6.4758 -3.0445 -0.1262 16 6 6.9520 -2.4100 0.9827 17 6 8.0430 -3.0755 1.4134 18 6 8.2536 -4.1547 0.5325 19 6 7.2799 -4.1111 -0.3994 20 6 4.0514 -2.6392 0.0015 21 1 -0.4849 0.8401 -0.0004 22 1 4.1095 0.5025 -1.2515 23 1 3.4419 -0.8893 -2.1668 24 1 6.1717 -0.6505 -0.7858 25 1 5.8165 -1.2040 -2.4511 26 1 6.5274 -1.5280 1.4389 27 1 8.6471 -2.8245 2.2728 28 1 9.0488 -4.8832 0.5927 29 1 7.1579 -4.8023 -1.2203 30 1 3.2992 -3.3189 -0.3988 31 1 4.3221 -2.9371 1.0146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260964742.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:03 Heat of formation + Delta-G solvation = 23.436053 kcal Electronic energy + Delta-G solvation = -13222.272773 eV Core-core repulsion = 11082.336458 eV Total energy + Delta-G solvation = -2139.936316 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.09896 -38.80538 -34.77090 -32.67218 -30.22576 -29.58742 -28.66415 -25.59560 -22.36530 -21.35017 -21.14562 -20.14431 -18.97182 -18.21337 -16.73642 -15.78423 -15.39256 -15.11259 -14.78588 -14.46998 -14.17016 -14.01342 -13.21820 -13.03896 -12.87156 -12.72007 -12.42033 -12.20489 -12.12530 -11.58742 -11.47983 -11.44763 -11.09286 -10.72085 -9.39953 -8.97454 -8.30973 -6.34750 1.31033 1.35346 1.44909 1.48364 2.15888 2.22952 2.32392 3.03939 3.59204 3.77463 4.00804 4.22789 4.43421 4.46682 4.49524 4.60227 4.70127 4.82109 4.82945 4.87340 4.93870 5.05194 5.27530 5.36910 5.46338 5.51846 5.59343 5.70327 6.20766 6.28265 6.46391 6.62416 6.72093 7.30761 8.85852 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.058082 B = 0.008644 C = 0.008405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.964854 B = 3238.620679 C = 3330.637655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.942 3.058 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.516 4.516 8 H 0.033 0.967 9 C 0.009 3.991 10 H 0.027 0.973 11 C -0.126 4.126 12 C -0.120 4.120 13 C 0.134 3.866 14 H 0.116 0.884 15 N -0.439 5.439 16 C -0.029 4.029 17 C -0.220 4.220 18 C -0.220 4.220 19 C -0.025 4.025 20 C -0.109 4.109 21 H 0.265 0.735 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.154 0.846 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.181 0.819 30 H 0.062 0.938 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.483 -3.811 -2.379 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.170 1.170 7 C -0.554 4.554 8 H 0.051 0.949 9 C -0.010 4.010 10 H 0.045 0.955 11 C -0.164 4.164 12 C -0.157 4.157 13 C 0.032 3.968 14 H 0.134 0.866 15 N -0.114 5.114 16 C -0.159 4.159 17 C -0.244 4.244 18 C -0.245 4.245 19 C -0.155 4.155 20 C -0.147 4.147 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.171 0.829 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.198 0.802 30 H 0.081 0.919 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.025 -3.619 -2.585 15.670 hybrid contribution -0.494 0.783 0.246 0.958 sum 14.531 -2.836 -2.338 14.989 Atomic orbital electron populations 1.70056 1.08266 1.28013 1.52808 1.25871 0.95362 1.03007 0.94202 0.85903 0.79302 0.78790 0.79299 1.18668 1.22349 1.17035 1.21360 0.91274 0.92870 1.49869 0.94887 1.19964 0.93492 0.93390 0.94115 0.95484 1.22839 0.95268 0.98711 0.99627 1.22688 0.97172 0.93675 1.02214 1.22212 0.82836 0.97925 0.93805 0.86560 1.44557 1.21982 1.22599 1.22271 1.21923 0.99427 1.02002 0.92594 1.21124 1.00317 0.99526 1.03455 1.21130 1.02481 1.02432 0.98410 1.22325 0.94810 0.94388 1.04022 1.22367 0.95301 0.98345 0.98675 0.92581 0.93188 0.91603 0.91091 0.89124 0.82871 0.83899 0.83309 0.80154 0.91920 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.04 13.96 21.45 0.30 -58.74 16 2 C 0.01 0.72 5.46 84.65 0.46 1.18 16 3 Si 0.94 43.66 24.65 68.60 1.69 45.36 16 4 H -0.26 -11.42 7.10 99.48 0.71 -10.71 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.25 -10.59 6.47 99.48 0.64 -9.95 16 7 C -0.52 -28.76 9.05 25.60 0.23 -28.52 16 8 H 0.03 2.04 7.79 -2.91 -0.02 2.02 16 9 C 0.01 0.41 2.28 -10.34 -0.02 0.39 16 10 H 0.03 1.23 7.06 -2.38 -0.02 1.21 16 11 C -0.13 -4.80 5.32 32.01 0.17 -4.63 16 12 C -0.12 -3.55 6.45 31.67 0.20 -3.34 16 13 C 0.13 4.00 3.61 45.71 0.17 4.16 16 14 H 0.12 2.96 8.08 -2.39 -0.02 2.94 16 15 N -0.44 -12.78 2.61 -498.25 -1.30 -14.08 16 16 C -0.03 -0.87 9.78 83.22 0.81 -0.06 16 17 C -0.22 -6.06 10.86 22.14 0.24 -5.82 16 18 C -0.22 -5.64 10.86 22.14 0.24 -5.40 16 19 C -0.03 -0.65 11.40 83.21 0.95 0.30 16 20 C -0.11 -4.08 5.95 31.32 0.19 -3.90 16 21 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 22 H 0.05 1.91 5.30 -2.39 -0.01 1.90 16 23 H 0.07 2.58 8.05 -2.39 -0.02 2.56 16 24 H 0.07 2.10 7.29 -2.39 -0.02 2.08 16 25 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 27 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 28 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.06 2.46 7.66 -2.39 -0.02 2.44 16 31 H 0.05 2.12 7.48 -2.38 -0.02 2.10 16 Total: -1.00 -63.70 250.31 5.36 -58.34 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.03 Total: 14.76 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 3.64 Total: -45.63 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.00 Total: -72.82 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.69 Total: 45.36 kcal Total: -63.70 5.36 -58.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260964742.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.775 kcal (2) G-P(sol) polarization free energy of solvation -63.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds