Wall clock time and date at job start Mon Mar 30 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48502 * 109.47158 * 85.12683 * 3 2 1 5 5 H 1.48498 * 109.47182 * 205.12530 * 3 2 1 6 6 H 1.48496 * 109.47346 * 325.12660 * 3 2 1 7 7 C 1.37877 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99437 * 5.13794 * 7 2 1 9 9 C 1.50692 * 120.00079 * 185.14401 * 7 2 1 10 10 H 1.09006 * 110.27245 * 307.30986 * 9 7 2 11 11 C 1.54414 * 110.30977 * 69.50007 * 9 7 2 12 12 C 1.54399 * 102.45025 * 145.07045 * 11 9 7 13 13 C 1.51201 * 105.18669 * 333.82568 * 12 11 9 14 14 N 1.32412 * 131.19890 * 197.08479 * 13 12 11 15 15 C 1.32449 * 120.74343 * 180.02562 * 14 13 12 16 16 N 1.38411 * 119.19260 * 179.97438 * 15 14 13 17 17 N 1.32506 * 121.61627 * 0.02562 * 15 14 13 18 18 C 1.32279 * 120.69006 * 359.97438 * 17 15 14 19 19 C 1.38426 * 109.70977 * 17.08744 * 13 12 11 20 20 H 0.96999 * 119.99807 * 0.02562 * 1 2 3 21 21 H 1.09004 * 110.80847 * 263.30680 * 11 9 7 22 22 H 1.09004 * 110.80991 * 26.82915 * 11 9 7 23 23 H 1.08999 * 110.29682 * 214.89954 * 12 11 9 24 24 H 1.08998 * 110.29813 * 92.75163 * 12 11 9 25 25 H 0.96999 * 119.99664 * 0.02562 * 16 15 14 26 26 H 0.96990 * 120.00023 * 180.02562 * 16 15 14 27 27 H 1.07998 * 120.42815 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3936 2.1059 1.3950 5 1 3.5944 1.4127 -0.5945 6 1 1.5019 2.6207 -0.8005 7 6 2.0046 -1.1940 -0.0005 8 1 1.4678 -2.1274 -0.0847 9 6 3.5070 -1.1967 0.1165 10 1 3.9456 -0.5414 -0.6361 11 6 3.9351 -0.7524 1.5320 12 6 5.1926 -1.6120 1.7846 13 6 5.0113 -2.8416 0.9235 14 7 5.6050 -4.0247 0.9565 15 6 5.2808 -4.9694 0.0866 16 7 5.9221 -6.1944 0.1500 17 7 4.3583 -4.7703 -0.8435 18 6 3.7273 -3.6110 -0.9313 19 6 4.0423 -2.6013 -0.0354 20 1 -0.4850 0.8401 -0.0004 21 1 4.1824 0.3091 1.5465 22 1 3.1575 -0.9801 2.2611 23 1 5.2539 -1.8924 2.8361 24 1 6.0885 -1.0688 1.4843 25 1 6.5995 -6.3527 0.8260 26 1 5.6941 -6.8944 -0.4814 27 1 2.9759 -3.4534 -1.6908 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261016837.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:12 Heat of formation + Delta-G solvation = 49.097063 kcal Electronic energy + Delta-G solvation = -12912.561153 eV Core-core repulsion = 10670.197239 eV Total energy + Delta-G solvation = -2242.363914 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.62154 -36.80268 -33.74413 -33.14752 -31.92743 -28.80875 -27.86256 -23.74222 -23.44660 -21.33437 -19.80565 -17.71390 -16.89631 -16.75879 -15.31729 -14.86563 -14.53037 -13.95117 -13.53258 -13.25017 -12.41977 -12.33327 -11.87585 -11.64804 -11.01802 -10.73012 -10.65117 -10.21517 -9.93409 -9.74944 -9.61534 -9.15885 -8.62859 -8.48271 -7.48785 -6.12557 -4.12600 1.72390 1.90725 3.24274 3.34281 3.34560 3.49792 4.36684 4.47860 4.51780 5.14185 5.29565 5.37834 5.61529 5.72370 5.79575 6.07104 6.25483 6.53167 6.55324 6.76084 6.84572 6.95133 7.29691 7.40839 7.60016 7.66229 7.85763 8.46234 8.88530 8.90935 9.48464 11.00227 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.053922 B = 0.010205 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.146335 B = 2743.062860 C = 3085.926653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.275 1.275 5 H -0.261 1.261 6 H -0.289 1.289 7 C -0.510 4.510 8 H 0.075 0.925 9 C 0.056 3.944 10 H 0.051 0.949 11 C -0.123 4.123 12 C -0.068 4.068 13 C 0.186 3.814 14 N -0.571 5.571 15 C 0.542 3.458 16 N -0.834 5.834 17 N -0.573 5.573 18 C 0.196 3.804 19 C -0.198 4.198 20 H 0.264 0.736 21 H 0.061 0.939 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.407 0.593 26 H 0.409 0.591 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.408 -4.753 1.140 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.201 1.201 5 H -0.186 1.186 6 H -0.216 1.216 7 C -0.548 4.548 8 H 0.093 0.907 9 C 0.036 3.964 10 H 0.069 0.931 11 C -0.161 4.161 12 C -0.106 4.106 13 C 0.039 3.961 14 N -0.294 5.294 15 C 0.183 3.817 16 N -0.385 5.385 17 N -0.296 5.296 18 C 0.031 3.969 19 C -0.204 4.204 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.098 0.902 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.237 0.763 26 H 0.239 0.761 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 10.671 -5.488 1.173 12.057 hybrid contribution 0.076 1.262 0.006 1.264 sum 10.747 -4.226 1.179 11.609 Atomic orbital electron populations 1.69906 1.06304 1.27019 1.50241 1.24971 0.94622 0.98892 0.94265 0.86928 0.80660 0.83968 0.78545 1.20101 1.18589 1.21550 1.20905 0.88191 0.94726 1.50936 0.90656 1.18628 0.97366 0.87522 0.92883 0.93135 1.22800 0.95040 0.97595 1.00708 1.21066 1.00274 0.91037 0.98259 1.21938 0.89537 0.90816 0.93828 1.66933 1.32489 1.02019 1.27985 1.19105 0.88409 0.87149 0.87045 1.41473 1.45363 1.11514 1.40127 1.67943 1.11942 1.24928 1.24785 1.22441 0.93471 0.85508 0.95507 1.22157 0.99628 1.00374 0.98268 0.92558 0.92034 0.90217 0.90430 0.89899 0.76285 0.76093 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.96 55.43 0.77 -25.67 15 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 15 3 Si 0.87 20.28 25.53 -169.99 -4.34 15.94 15 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.26 -5.74 6.20 56.52 0.35 -5.39 15 6 H -0.29 -6.82 7.11 56.52 0.40 -6.41 15 7 C -0.51 -13.59 8.81 -34.44 -0.30 -13.89 15 8 H 0.08 2.20 7.90 -52.49 -0.41 1.79 15 9 C 0.06 1.26 2.29 -92.00 -0.21 1.05 15 10 H 0.05 1.15 6.49 -51.93 -0.34 0.81 15 11 C -0.12 -2.45 5.53 -25.26 -0.14 -2.59 15 12 C -0.07 -1.18 6.77 -26.90 -0.18 -1.36 15 13 C 0.19 3.69 7.37 -82.03 -0.60 3.09 15 14 N -0.57 -11.04 10.46 -10.02 -0.10 -11.15 15 15 C 0.54 9.92 8.67 -322.84 -2.80 7.12 15 16 N -0.83 -11.01 9.07 29.76 0.27 -10.74 15 17 N -0.57 -11.14 10.46 -13.93 -0.15 -11.29 15 18 C 0.20 3.98 11.00 -17.22 -0.19 3.80 15 19 C -0.20 -4.21 5.60 -104.23 -0.58 -4.79 15 20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 21 H 0.06 1.15 6.53 -51.93 -0.34 0.81 15 22 H 0.08 1.67 7.91 -51.93 -0.41 1.26 15 23 H 0.08 1.21 8.14 -51.93 -0.42 0.78 15 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.41 4.46 8.94 -40.82 -0.37 4.10 15 26 H 0.41 4.49 8.94 -40.82 -0.37 4.13 15 27 H 0.17 3.19 8.06 -52.49 -0.42 2.77 15 LS Contribution 230.74 15.07 3.48 3.48 Total: -1.00 -30.56 230.74 -7.87 -38.43 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -2.69 Total: 6.63 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -5.11 Total: -5.63 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.79 Total: -58.84 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.34 Total: 15.94 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.56 -7.87 -38.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261016837.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.524 kcal (2) G-P(sol) polarization free energy of solvation -30.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds