Wall clock time and date at job start Mon Mar 30 2020 01:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 C 1.50707 * 109.47019 * 240.00372 * 2 1 3 13 13 C 1.38635 * 120.74588 * 299.71905 * 12 2 1 14 14 C 1.38660 * 119.38824 * 179.70822 * 13 12 2 15 15 N 1.31446 * 120.92472 * 0.58109 * 14 13 12 16 16 C 1.32889 * 121.62618 * 359.71716 * 15 14 13 17 17 C 1.47560 * 119.73869 * 180.02562 * 16 15 14 18 18 O 1.21208 * 120.00167 * 359.97438 * 17 16 15 19 19 C 1.38563 * 120.75308 * 119.99876 * 12 2 1 20 20 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 21 21 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 23 23 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 24 24 H 1.08007 * 120.30363 * 359.97438 * 13 12 2 25 25 H 1.07993 * 119.53615 * 180.32358 * 14 13 12 26 26 H 1.08001 * 119.99732 * 179.97438 * 17 16 15 27 27 H 1.07995 * 120.47575 * 0.02730 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 6 2.0323 -0.7104 -1.2306 13 6 1.7116 -2.0390 -1.4625 14 6 2.1840 -2.6633 -2.6070 15 7 2.9391 -2.0163 -3.4666 16 6 3.2750 -0.7442 -3.2797 17 6 4.1246 -0.0580 -4.2720 18 8 4.5136 -0.6547 -5.2527 19 6 2.8298 -0.0520 -2.1528 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7082 1.1608 3.4845 24 1 1.0960 -2.5817 -0.7603 25 1 1.9313 -3.6967 -2.7926 26 1 4.3997 0.9759 -4.1245 27 1 3.1031 0.9818 -2.0014 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261113738.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:28 Heat of formation + Delta-G solvation = -27.964973 kcal Electronic energy + Delta-G solvation = -12545.549516 eV Core-core repulsion = 10267.551190 eV Total energy + Delta-G solvation = -2277.998326 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.084 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.30963 -39.49926 -36.71388 -33.89246 -32.56771 -30.79658 -27.23337 -26.51420 -24.38989 -23.44878 -20.97040 -18.56101 -17.74202 -17.38989 -16.88077 -16.49051 -15.72557 -15.65105 -15.22736 -14.70634 -14.22489 -14.12213 -13.46832 -13.01618 -12.84825 -12.83602 -12.33761 -12.11977 -11.76889 -11.18780 -11.04859 -10.48957 -10.26233 -10.20942 -10.04487 -8.12543 -6.26135 -0.35983 0.42875 1.42271 1.44382 1.47273 1.53843 2.42612 3.00229 3.02651 3.17278 3.75408 4.03690 4.18346 4.29825 4.36796 4.63938 4.76923 4.90953 4.98361 5.18528 5.21304 5.37870 5.61178 5.75998 5.92048 6.03602 6.29155 6.36761 6.81421 7.01182 7.42519 8.91940 Molecular weight = 205.08amu Principal moments of inertia in cm(-1) A = 0.048540 B = 0.008029 C = 0.007942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.702013 B = 3486.339496 C = 3524.711944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.071 3.929 3 H 0.022 0.978 4 C -0.525 4.525 5 H 0.051 0.949 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.270 1.270 12 C -0.028 4.028 13 C -0.139 4.139 14 C 0.084 3.916 15 N -0.483 5.483 16 C 0.000 4.000 17 C 0.405 3.595 18 O -0.485 6.485 19 C -0.124 4.124 20 H 0.028 0.972 21 H 0.033 0.967 22 H 0.062 0.938 23 H 0.263 0.737 24 H 0.138 0.862 25 H 0.182 0.818 26 H 0.177 0.823 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 -0.808 -6.088 6.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.053 3.947 3 H 0.040 0.960 4 C -0.563 4.563 5 H 0.070 0.930 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.776 3.224 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 C -0.036 4.036 13 C -0.159 4.159 14 C -0.075 4.075 15 N -0.195 5.195 16 C -0.135 4.135 17 C 0.263 3.737 18 O -0.356 6.356 19 C -0.144 4.144 20 H 0.047 0.953 21 H 0.053 0.947 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.156 0.844 25 H 0.199 0.801 26 H 0.193 0.807 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.221 -1.425 -7.258 7.723 hybrid contribution -0.311 0.006 2.035 2.059 sum 1.910 -1.419 -5.223 5.739 Atomic orbital electron populations 1.21654 0.96889 0.99580 1.00132 1.17806 0.93465 0.94658 0.88764 0.96015 1.21307 1.31353 1.12663 0.90947 0.93031 1.25610 0.95115 0.95573 1.01536 1.69979 1.37140 1.23796 1.24183 0.85670 0.78064 0.79188 0.79438 1.20374 1.20947 1.19464 1.21010 0.92795 0.94553 0.95213 1.22440 1.00009 0.95332 0.98109 1.23144 0.93594 1.00921 0.89862 1.67703 1.11839 1.09090 1.30897 1.22664 1.01498 0.91854 0.97503 1.24935 0.73986 0.94169 0.80646 1.90477 1.45591 1.70508 1.29017 1.22450 0.96708 1.02299 0.92971 0.95335 0.94741 0.91876 0.92777 0.84373 0.80147 0.80712 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.79 71.98 0.63 -4.86 15 2 C 0.07 3.24 2.50 -12.29 -0.03 3.21 15 3 H 0.02 1.05 7.94 -2.39 -0.02 1.03 15 4 C -0.52 -26.48 8.26 25.60 0.21 -26.27 15 5 H 0.05 2.61 7.61 -2.91 -0.02 2.59 15 6 C 0.02 1.09 5.30 84.66 0.45 1.54 15 7 N -0.91 -48.94 11.32 21.45 0.24 -48.69 15 8 Si 0.95 41.11 29.54 68.60 2.03 43.13 15 9 H -0.28 -11.87 7.11 99.48 0.71 -11.17 15 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 12 C -0.03 -1.07 4.75 -19.69 -0.09 -1.17 15 13 C -0.14 -4.92 8.87 22.47 0.20 -4.72 15 14 C 0.08 2.70 11.18 84.85 0.95 3.65 15 15 N -0.48 -17.15 10.08 -185.17 -1.87 -19.02 15 16 C 0.00 0.01 6.74 41.76 0.28 0.29 15 17 C 0.40 10.43 11.48 70.28 0.81 11.23 15 18 O -0.48 -16.36 17.70 -2.81 -0.05 -16.41 15 19 C -0.12 -4.00 9.49 22.66 0.22 -3.79 15 20 H 0.03 1.11 8.14 -2.38 -0.02 1.09 15 21 H 0.03 1.44 7.49 -2.39 -0.02 1.42 15 22 H 0.06 3.12 6.07 -2.39 -0.01 3.11 15 23 H 0.26 13.51 8.31 -92.71 -0.77 12.74 15 24 H 0.14 4.78 7.68 -2.91 -0.02 4.76 15 25 H 0.18 4.53 8.06 -2.91 -0.02 4.51 15 26 H 0.18 2.39 8.06 -2.91 -0.02 2.36 15 27 H 0.16 4.24 8.01 -2.91 -0.02 4.22 15 Total: -1.00 -62.50 244.69 5.14 -57.36 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.16 Total: 4.51 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 3.62 Total: -20.88 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.62 Total: -67.71 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.05 Total: -16.41 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -62.50 5.14 -57.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261113738.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.395 kcal (2) G-P(sol) polarization free energy of solvation -62.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds