Wall clock time and date at job start Mon Mar 30 2020 02:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46811 * 299.99957 * 3 2 1 6 6 H 1.48495 * 109.47227 * 59.99876 * 3 2 1 7 7 C 1.38827 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00340 * 179.97438 * 7 2 1 9 9 N 1.36991 * 120.00425 * 0.02562 * 7 2 1 10 10 C 1.38434 * 120.00175 * 179.97438 * 9 7 2 11 11 N 1.32550 * 119.21819 * 0.27402 * 10 9 7 12 12 C 1.32218 * 120.74386 * 180.24308 * 11 10 9 13 13 C 1.38691 * 119.19117 * 359.48641 * 12 11 10 14 14 C 1.38627 * 118.55511 * 0.25285 * 13 12 11 15 15 C 1.50704 * 120.39983 * 179.97438 * 14 13 12 16 16 C 1.52993 * 117.49968 * 343.75549 * 15 14 13 17 17 C 1.52992 * 117.50208 * 275.08774 * 15 14 13 18 18 N 1.32258 * 119.19976 * 0.02562 * 14 13 12 19 19 H 0.96996 * 119.99818 * 359.97438 * 1 2 3 20 20 H 0.96995 * 119.99477 * 0.02562 * 9 7 2 21 21 H 1.08002 * 120.40772 * 179.76859 * 12 11 10 22 22 H 1.07994 * 120.71993 * 180.27545 * 13 12 11 23 23 H 1.09006 * 115.54539 * 129.41965 * 15 14 13 24 24 H 1.08993 * 117.49967 * 359.97438 * 16 15 14 25 25 H 1.09006 * 117.50046 * 145.01965 * 16 15 14 26 26 H 1.09000 * 117.50132 * 214.98228 * 17 15 14 27 27 H 1.09001 * 117.49906 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3963 -1.2125 6 1 1.8907 2.3964 1.2124 7 6 2.0095 -1.2023 0.0005 8 1 3.0895 -1.2024 0.0001 9 7 1.3246 -2.3887 0.0005 10 6 2.0168 -3.5876 0.0005 11 7 3.3422 -3.5695 0.0061 12 6 4.0335 -4.6965 0.0014 13 6 3.3552 -5.9062 0.0015 14 6 1.9690 -5.8886 0.0011 15 6 1.1900 -7.1787 0.0005 16 6 1.9403 -8.4568 -0.3792 17 6 0.9282 -7.8454 -1.3514 18 7 1.3385 -4.7260 0.0001 19 1 -0.4850 0.8400 0.0004 20 1 0.3547 -2.3887 -0.0002 21 1 5.1134 -4.6754 0.0022 22 1 3.8952 -6.8415 0.0022 23 1 0.4122 -7.2584 0.7601 24 1 2.9972 -8.3646 -0.6290 25 1 1.6558 -9.3776 0.1302 26 1 -0.0216 -8.3641 -1.4813 27 1 1.3191 -7.3507 -2.2406 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261120909.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:56 Heat of formation + Delta-G solvation = 77.220904 kcal Electronic energy + Delta-G solvation = -12468.076457 eV Core-core repulsion = 10226.932084 eV Total energy + Delta-G solvation = -2241.144373 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.81422 -37.03340 -35.11282 -32.33199 -31.90427 -29.10082 -25.18982 -24.14074 -22.68207 -21.86748 -20.20470 -18.03898 -16.86313 -16.13258 -15.28658 -14.70159 -14.39266 -13.83561 -13.68192 -13.48296 -12.98689 -11.73945 -11.56546 -11.37198 -11.35801 -10.80431 -10.51305 -10.38893 -10.28121 -10.23094 -9.66456 -9.38559 -8.84056 -7.90254 -7.32445 -6.61970 -3.82533 2.19950 2.30163 3.15488 3.17533 3.24286 3.91614 4.05012 4.50494 4.72508 4.90841 5.09341 5.14906 5.32345 5.53935 5.56538 5.73440 5.94653 6.10971 6.24944 6.34652 6.36233 6.38495 6.83217 7.30613 7.45760 7.83216 8.30846 8.63055 9.03213 9.26305 9.85241 10.54387 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.066565 B = 0.007448 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.541990 B = 3758.579684 C = 4099.367266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.018 3.982 3 Si 0.940 3.060 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.281 4.281 8 H 0.116 0.884 9 N -0.502 5.502 10 C 0.497 3.503 11 N -0.577 5.577 12 C 0.195 3.805 13 C -0.367 4.367 14 C 0.250 3.750 15 C -0.099 4.099 16 C -0.173 4.173 17 C -0.164 4.164 18 N -0.595 5.595 19 H 0.276 0.724 20 H 0.411 0.589 21 H 0.145 0.855 22 H 0.119 0.881 23 H 0.116 0.884 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 -10.146 -0.700 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.186 4.186 3 Si 0.766 3.234 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.413 4.413 8 H 0.134 0.866 9 N -0.113 5.113 10 C 0.142 3.858 11 N -0.302 5.302 12 C 0.022 3.978 13 C -0.399 4.399 14 C 0.097 3.903 15 C -0.118 4.118 16 C -0.210 4.210 17 C -0.202 4.202 18 N -0.321 5.321 19 H 0.086 0.914 20 H 0.248 0.752 21 H 0.162 0.838 22 H 0.137 0.863 23 H 0.134 0.866 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.825 -8.642 -0.689 9.118 hybrid contribution 0.339 0.023 0.029 0.341 sum 3.164 -8.619 -0.660 9.205 Atomic orbital electron populations 1.69703 1.06131 1.28775 1.47783 1.25457 0.95817 1.00237 0.97108 0.85627 0.79640 0.80194 0.77921 1.18841 1.20506 1.20496 1.20059 0.93879 0.81348 1.45979 0.86587 1.40573 1.08509 1.00785 1.61397 1.19079 0.85423 0.85868 0.95440 1.67855 1.07358 1.30599 1.24392 1.22560 0.99089 0.87467 0.88670 1.21612 0.95281 0.99322 1.23683 1.19965 0.90336 0.90903 0.89140 1.20713 1.01653 0.89527 0.99907 1.23037 0.98453 0.95975 1.03538 1.22903 1.00504 1.03169 0.93620 1.67403 1.41071 0.97405 1.26190 0.91366 0.75235 0.83775 0.86266 0.86645 0.88164 0.88636 0.88629 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 13.05 55.49 0.72 -23.47 15 2 C 0.02 0.48 5.50 -17.46 -0.10 0.38 15 3 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 15 4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.28 -5.99 7.11 56.52 0.40 -5.58 15 7 C -0.28 -7.70 9.69 -15.03 -0.15 -7.84 15 8 H 0.12 3.19 7.05 -52.49 -0.37 2.82 15 9 N -0.50 -13.59 5.43 -12.78 -0.07 -13.66 15 10 C 0.50 12.75 8.38 -322.66 -2.70 10.05 15 11 N -0.58 -14.00 9.10 -13.90 -0.13 -14.13 15 12 C 0.20 3.88 11.30 -17.22 -0.19 3.68 15 13 C -0.37 -6.77 9.43 -39.27 -0.37 -7.14 15 14 C 0.25 4.99 6.50 -82.26 -0.53 4.45 15 15 C -0.10 -1.54 6.24 -91.78 -0.57 -2.11 15 16 C -0.17 -2.06 9.83 -26.69 -0.26 -2.32 15 17 C -0.16 -2.16 10.24 -26.69 -0.27 -2.43 15 18 N -0.59 -14.13 10.40 -10.13 -0.11 -14.23 15 19 H 0.28 7.04 8.31 -40.82 -0.34 6.70 15 20 H 0.41 11.25 8.01 -40.82 -0.33 10.92 15 21 H 0.14 2.27 8.06 -52.49 -0.42 1.85 15 22 H 0.12 1.79 6.38 -52.49 -0.33 1.46 15 23 H 0.12 1.73 8.14 -51.93 -0.42 1.31 15 24 H 0.10 1.16 6.46 -51.93 -0.34 0.83 15 25 H 0.10 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.10 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.09 1.32 8.14 -51.93 -0.42 0.90 15 LS Contribution 242.79 15.07 3.66 3.66 Total: -1.00 -29.51 242.79 -8.71 -38.22 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -2.62 Total: 11.50 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -5.15 Total: -3.29 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: 0.42 Total: -65.49 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.51 -8.71 -38.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120909.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.441 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds