Wall clock time and date at job start Mon Mar 30 2020 02:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38222 * 119.61755 * 2 1 4 4 C 1.38635 * 119.15774 * 179.97438 * 3 2 1 5 5 C 1.38665 * 118.42044 * 0.02562 * 4 3 2 6 6 C 1.50708 * 120.41708 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47003 * 358.54816 * 6 5 4 8 8 C 1.52998 * 109.47081 * 118.55204 * 6 5 4 9 9 C 1.50705 * 109.46764 * 238.54928 * 6 5 4 10 10 H 1.07994 * 120.00473 * 0.08671 * 9 6 5 11 11 C 1.37882 * 119.99535 * 180.02562 * 9 6 5 12 12 N 1.31511 * 120.00222 * 0.02562 * 11 9 6 13 13 Si 1.86801 * 119.99721 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.46773 * 90.00432 * 13 11 9 15 15 H 1.48497 * 109.46962 * 210.00051 * 13 11 9 16 16 H 1.48496 * 109.47198 * 330.00397 * 13 11 9 17 17 C 1.38186 * 119.16851 * 0.27200 * 5 4 3 18 18 N 1.31861 * 119.61682 * 179.97438 * 2 1 3 19 19 H 1.09001 * 109.46950 * 89.99847 * 1 2 3 20 20 H 1.08998 * 109.47148 * 209.99651 * 1 2 3 21 21 H 1.08994 * 109.46891 * 329.99789 * 1 2 3 22 22 H 1.07998 * 120.42202 * 0.02562 * 3 2 1 23 23 H 1.08000 * 120.78569 * 179.97438 * 4 3 2 24 24 H 1.08997 * 109.46759 * 179.97438 * 7 6 5 25 25 H 1.09004 * 109.46662 * 60.00278 * 7 6 5 26 26 H 1.08999 * 109.47103 * 300.00387 * 7 6 5 27 27 H 1.09000 * 109.47016 * 299.99447 * 8 6 5 28 28 H 1.08996 * 109.47211 * 60.00065 * 8 6 5 29 29 H 1.08997 * 109.47223 * 179.97438 * 8 6 5 30 30 H 0.97002 * 120.00429 * 179.97438 * 12 11 9 31 31 H 1.07994 * 119.62170 * 179.70381 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5764 1.1905 0.0005 5 6 4.2266 -0.0343 0.0005 6 6 5.7323 -0.0989 0.0017 7 6 6.3036 1.3200 -0.0338 8 6 6.2112 -0.8101 1.2688 9 6 6.2033 -0.8606 -1.2104 10 1 5.4844 -1.2569 -1.9122 11 6 7.5521 -1.0503 -1.4241 12 7 8.4276 -0.5672 -0.5699 13 14 8.1360 -1.9951 -2.9261 14 1 8.3430 -1.0520 -4.0544 15 1 9.4154 -2.6808 -2.6131 16 1 7.1137 -3.0033 -3.3049 17 6 3.4766 -1.1949 -0.0058 18 7 2.1587 -1.1463 0.0005 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5138 22 1 1.6508 2.1373 0.0004 23 1 4.1366 2.1139 0.0001 24 1 7.3926 1.2732 -0.0325 25 1 5.9629 1.8708 0.8429 26 1 5.9623 1.8266 -0.9365 27 1 5.8706 -0.2592 2.1455 28 1 5.8042 -1.8209 1.2940 29 1 7.3002 -0.8572 1.2694 30 1 9.3766 -0.7010 -0.7200 31 1 3.9754 -2.1527 -0.0107 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261127350.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:58 Heat of formation + Delta-G solvation = 18.337047 kcal Electronic energy + Delta-G solvation = -13249.971496 eV Core-core repulsion = 11109.814071 eV Total energy + Delta-G solvation = -2140.157425 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.66780 -35.87739 -32.29058 -31.68543 -30.27328 -26.65094 -25.91436 -25.18484 -22.46502 -21.74912 -19.00708 -16.29216 -15.96882 -15.32302 -14.77404 -13.95698 -13.91249 -13.05211 -12.80696 -12.53081 -11.99816 -11.93483 -11.57564 -11.54962 -11.23761 -10.98267 -10.69261 -10.47389 -10.22935 -9.85806 -9.57560 -9.17136 -8.91796 -8.62539 -8.37221 -7.84840 -6.03279 -4.13902 1.86524 2.04358 3.27177 3.34398 3.38620 4.35958 4.54240 4.91876 5.23167 5.28609 5.56969 5.75835 5.82885 5.92113 5.98640 6.07433 6.32552 6.49293 6.66144 6.74802 6.81239 6.93261 6.96267 7.16369 7.28856 7.49050 7.56340 7.70078 7.98776 8.10710 8.36711 8.70289 8.86224 9.51835 10.97719 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.045034 B = 0.009720 C = 0.008916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.597269 B = 2880.048101 C = 3139.590018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.085 3.915 3 C -0.177 4.177 4 C -0.092 4.092 5 C -0.078 4.078 6 C 0.098 3.902 7 C -0.133 4.133 8 C -0.127 4.127 9 C -0.503 4.503 10 H 0.056 0.944 11 C 0.067 3.933 12 N -0.885 5.885 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.103 3.897 18 N -0.492 5.492 19 H 0.067 0.933 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.120 0.880 23 H 0.131 0.869 24 H 0.087 0.913 25 H 0.011 0.989 26 H 0.028 0.972 27 H 0.009 0.991 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.261 0.739 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 2.763 1.602 8.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.118 4.118 5 C -0.080 4.080 6 C 0.097 3.903 7 C -0.191 4.191 8 C -0.185 4.185 9 C -0.541 4.541 10 H 0.075 0.925 11 C -0.135 4.135 12 N -0.524 5.524 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.054 4.054 18 N -0.202 5.202 19 H 0.086 0.914 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.138 0.862 23 H 0.149 0.851 24 H 0.106 0.894 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.028 0.972 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.465 1.988 1.636 8.848 hybrid contribution 0.901 0.371 -0.900 1.326 sum -7.564 2.359 0.737 7.957 Atomic orbital electron populations 1.20561 0.89998 1.02410 1.02138 1.21019 0.96281 0.88894 0.99037 1.21804 0.95119 0.98424 1.04328 1.21671 0.93595 0.98972 0.97520 1.21620 0.99898 0.92646 0.93858 1.17219 0.83695 0.94168 0.95174 1.21895 1.04660 0.96062 0.96478 1.21815 1.04516 0.97458 0.94682 1.21045 0.91735 1.34352 1.06942 0.92531 1.24898 0.96688 0.95498 0.96381 1.69802 1.01602 1.45466 1.35521 0.86581 0.78211 0.80132 0.83059 1.20741 1.21161 1.19853 1.22626 0.88130 0.99104 0.95553 1.67445 1.10563 1.29205 1.12957 0.91382 0.91229 0.91605 0.86176 0.85108 0.89395 0.96964 0.95286 0.97201 0.95207 0.89266 0.92902 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 10.17 36.01 0.37 -0.86 16 2 C 0.09 1.50 6.78 -82.58 -0.56 0.94 16 3 C -0.18 -3.02 9.74 -39.44 -0.38 -3.41 16 4 C -0.09 -1.78 9.07 -39.28 -0.36 -2.14 16 5 C -0.08 -1.71 4.72 -104.48 -0.49 -2.20 16 6 C 0.10 2.34 0.59 -156.81 -0.09 2.25 16 7 C -0.13 -3.08 6.93 37.16 0.26 -2.82 16 8 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 9 C -0.50 -13.18 7.67 -34.44 -0.26 -13.44 16 10 H 0.06 1.52 7.56 -52.49 -0.40 1.12 16 11 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 12 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 13 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.10 2.20 9.86 -17.55 -0.17 2.03 16 18 N -0.49 -9.95 10.27 -9.47 -0.10 -10.04 16 19 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 20 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 22 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 23 H 0.13 2.37 6.05 -52.49 -0.32 2.05 16 24 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 25 H 0.01 0.24 7.48 -51.93 -0.39 -0.15 16 26 H 0.03 0.64 7.61 -51.93 -0.40 0.25 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.67 7.51 -51.93 -0.39 0.28 16 29 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.15 3.25 7.66 -52.49 -0.40 2.85 16 LS Contribution 254.13 15.07 3.83 3.83 Total: -1.00 -27.42 254.13 -6.43 -33.84 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.17 Total: 0.43 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.49 Total: -20.66 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.42 Total: -33.16 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.42 -6.43 -33.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127350.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.181 kcal (2) G-P(sol) polarization free energy of solvation -27.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds