Wall clock time and date at job start Mon Mar 30 2020 02:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47309 * 336.67677 * 3 2 1 5 5 C 1.34949 * 126.03654 * 125.00235 * 4 3 2 6 6 C 1.35312 * 107.74444 * 179.97438 * 5 4 3 7 7 C 1.50701 * 126.04072 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 19.99905 * 7 6 5 9 9 N 1.46896 * 109.47239 * 140.00058 * 7 6 5 10 10 C 1.50703 * 109.47064 * 259.99941 * 7 6 5 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 7 6 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47116 * 59.99536 * 14 12 10 16 16 H 1.48500 * 109.46585 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46730 * 299.99515 * 14 12 10 18 18 C 1.39875 * 107.92328 * 0.26025 * 6 5 4 19 19 N 1.30842 * 108.19758 * 359.55633 * 18 6 5 20 20 H 4.40639 * 5.51503 * 180.02562 * 4 1 2 21 21 H 1.08997 * 109.47074 * 216.67508 * 3 2 1 22 22 H 1.09010 * 109.46924 * 96.67744 * 3 2 1 23 23 H 1.08000 * 126.12823 * 359.97438 * 5 4 3 24 24 H 1.00907 * 110.99811 * 296.04225 * 9 7 6 25 25 H 1.00900 * 111.00550 * 59.99964 * 9 7 6 26 26 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 27 27 H 1.07993 * 125.90224 * 179.73482 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2674 0.5468 5 6 3.9901 -2.1167 -0.0603 6 6 4.1896 -3.1654 0.7711 7 6 5.0741 -4.3553 0.5010 8 1 5.7949 -4.1031 -0.2768 9 7 5.7890 -4.7233 1.7304 10 6 4.2286 -5.5165 0.0449 11 1 3.1579 -5.4041 -0.0403 12 6 4.8219 -6.7225 -0.2625 13 7 6.1257 -6.8594 -0.1582 14 14 3.7739 -8.1616 -0.8285 15 1 3.0522 -7.7895 -2.0718 16 1 4.6455 -9.3340 -1.0946 17 1 2.7912 -8.5048 0.2305 18 6 3.4257 -2.9527 1.9234 19 7 2.7978 -1.8123 1.7926 20 1 -1.0498 -0.0005 0.0000 21 1 3.0089 0.8250 0.6138 22 1 3.0092 0.1203 -1.0208 23 1 4.4355 -1.9832 -1.0351 24 1 6.4122 -3.9848 2.0210 25 1 5.1422 -4.9616 2.4673 26 1 6.5431 -7.7080 -0.3741 27 1 3.3668 -3.6139 2.7752 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261157306.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:38 Heat of formation + Delta-G solvation = 140.193289 kcal Electronic energy + Delta-G solvation = -12469.935493 eV Core-core repulsion = 10231.521808 eV Total energy + Delta-G solvation = -2238.413685 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.54404 -35.13313 -33.93257 -31.62231 -31.06967 -29.05409 -26.63634 -25.51718 -22.03675 -20.70815 -19.45944 -18.10074 -16.48233 -16.13672 -15.14441 -14.52062 -14.16214 -14.05850 -13.41531 -12.99336 -12.64097 -12.38198 -11.93609 -11.20987 -10.79488 -10.71696 -10.64374 -10.39551 -10.09599 -9.69063 -9.12333 -8.86359 -8.33619 -7.59432 -6.94138 -5.78227 -3.91661 2.26032 2.52883 2.74126 3.40424 3.42537 3.44948 3.46830 3.63634 4.22108 4.57219 4.92335 5.22755 5.44332 5.51429 5.63366 5.78618 6.30651 6.37024 6.58748 6.82355 7.30578 7.49232 7.58117 7.64758 8.00890 8.29367 8.34434 8.76897 9.13991 9.27540 9.76453 11.25966 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.041664 B = 0.008276 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.884225 B = 3382.610482 C = 3751.038806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.203 4.203 3 C 0.253 3.747 4 N -0.390 5.390 5 C 0.031 3.969 6 C -0.213 4.213 7 C 0.287 3.713 8 H 0.041 0.959 9 N -0.808 5.808 10 C -0.526 4.526 11 H 0.050 0.950 12 C 0.083 3.917 13 N -0.850 5.850 14 Si 0.882 3.118 15 H -0.280 1.280 16 H -0.289 1.289 17 H -0.279 1.279 18 C 0.051 3.949 19 N -0.307 5.307 20 H 0.219 0.781 21 H 0.099 0.901 22 H 0.114 0.886 23 H 0.167 0.833 24 H 0.296 0.704 25 H 0.316 0.684 26 H 0.255 0.745 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 11.707 -0.171 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.204 4.204 3 C 0.132 3.868 4 N -0.175 5.175 5 C -0.111 4.111 6 C -0.226 4.226 7 C 0.176 3.824 8 H 0.059 0.941 9 N -0.332 5.332 10 C -0.565 4.565 11 H 0.068 0.932 12 C -0.123 4.123 13 N -0.485 5.485 14 Si 0.709 3.291 15 H -0.206 1.206 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.136 4.136 19 N -0.129 5.129 20 H 0.236 0.764 21 H 0.117 0.883 22 H 0.132 0.868 23 H 0.184 0.816 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.065 0.935 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.610 11.913 -0.159 13.169 hybrid contribution -0.846 -0.611 -0.336 1.096 sum -6.457 11.302 -0.495 13.026 Atomic orbital electron populations 1.24914 0.95895 0.98196 1.00285 1.23012 0.94490 1.01933 1.00935 1.18242 0.84374 0.84275 0.99918 1.48363 1.37405 1.17720 1.14027 1.22334 0.97027 0.92020 0.99738 1.22137 1.05940 1.00014 0.94515 1.17533 0.89018 0.86443 0.89363 0.94106 1.59233 1.23326 1.43910 1.06761 1.20857 0.92897 0.95964 1.46748 0.93202 1.24945 0.94602 0.98095 0.94697 1.70091 1.08624 1.24245 1.45564 0.86871 0.80492 0.82563 0.79133 1.20566 1.21439 1.20431 1.23688 0.95950 0.94223 0.99709 1.77192 1.24117 1.12358 0.99191 0.76396 0.88303 0.86825 0.81566 0.89373 0.87273 0.93541 0.80865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 19.25 29.55 0.57 -1.60 15 2 C -0.20 -2.81 13.52 -37.12 -0.50 -3.31 15 3 C 0.25 3.21 6.99 -6.83 -0.05 3.16 15 4 N -0.39 -6.78 3.65 -64.24 -0.23 -7.02 15 5 C 0.03 0.58 11.36 -17.22 -0.20 0.39 15 6 C -0.21 -4.53 5.02 -105.05 -0.53 -5.06 15 7 C 0.29 7.07 3.06 -70.02 -0.21 6.85 15 8 H 0.04 1.09 8.14 -51.93 -0.42 0.67 15 9 N -0.81 -18.86 8.44 -6.65 -0.06 -18.92 15 10 C -0.53 -14.50 8.71 -34.44 -0.30 -14.80 15 11 H 0.05 1.41 7.74 -52.49 -0.41 1.00 15 12 C 0.08 2.32 5.39 -17.82 -0.10 2.22 15 13 N -0.85 -24.78 12.77 55.43 0.71 -24.08 15 14 Si 0.88 21.56 29.54 -169.99 -5.02 16.53 15 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 18 C 0.05 1.03 11.40 -17.36 -0.20 0.83 15 19 N -0.31 -6.07 12.39 30.63 0.38 -5.70 15 20 H 0.22 1.86 7.80 -54.10 -0.42 1.44 15 21 H 0.10 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.11 1.07 8.07 -51.92 -0.42 0.65 15 23 H 0.17 2.61 8.06 -52.49 -0.42 2.19 15 24 H 0.30 6.22 9.06 -39.29 -0.36 5.86 15 25 H 0.32 7.03 8.19 -39.29 -0.32 6.71 15 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 15 27 H 0.17 3.20 7.67 -52.49 -0.40 2.80 15 LS Contribution 253.98 15.07 3.83 3.83 Total: -1.00 -32.67 253.98 -4.64 -37.31 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -2.73 Total: 9.36 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.51 Total: -11.32 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.80 Total: -55.71 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.67 -4.64 -37.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157306.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.502 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds