Wall clock time and date at job start Mon Mar 30 2020 02:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47309 * 336.67677 * 3 2 1 5 5 C 1.34949 * 126.03654 * 125.00235 * 4 3 2 6 6 C 1.35312 * 107.74444 * 179.97438 * 5 4 3 7 7 C 1.50701 * 126.04072 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47060 * 19.99905 * 7 6 5 9 9 N 1.46896 * 109.47239 * 140.00058 * 7 6 5 10 10 C 1.50703 * 109.47064 * 259.99941 * 7 6 5 11 11 H 1.07996 * 119.99751 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 7 6 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47116 * 59.99536 * 14 12 10 16 16 H 1.48500 * 109.46585 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46730 * 299.99515 * 14 12 10 18 18 C 1.39875 * 107.92328 * 0.26025 * 6 5 4 19 19 N 1.30842 * 108.19758 * 359.55633 * 18 6 5 20 20 H 4.40639 * 5.51503 * 180.02562 * 4 1 2 21 21 H 1.08997 * 109.47074 * 216.67508 * 3 2 1 22 22 H 1.09010 * 109.46924 * 96.67744 * 3 2 1 23 23 H 1.08000 * 126.12823 * 359.97438 * 5 4 3 24 24 H 1.00907 * 110.99811 * 296.04225 * 9 7 6 25 25 H 1.00900 * 111.00550 * 59.99964 * 9 7 6 26 26 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 27 27 H 1.07993 * 125.90224 * 179.73482 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2674 0.5468 5 6 3.9901 -2.1167 -0.0603 6 6 4.1896 -3.1654 0.7711 7 6 5.0741 -4.3553 0.5010 8 1 5.7949 -4.1031 -0.2768 9 7 5.7890 -4.7233 1.7304 10 6 4.2286 -5.5165 0.0449 11 1 3.1579 -5.4041 -0.0403 12 6 4.8219 -6.7225 -0.2625 13 7 6.1257 -6.8594 -0.1582 14 14 3.7739 -8.1616 -0.8285 15 1 3.0522 -7.7895 -2.0718 16 1 4.6455 -9.3340 -1.0946 17 1 2.7912 -8.5048 0.2305 18 6 3.4257 -2.9527 1.9234 19 7 2.7978 -1.8123 1.7926 20 1 -1.0498 -0.0005 0.0000 21 1 3.0089 0.8250 0.6138 22 1 3.0092 0.1203 -1.0208 23 1 4.4355 -1.9832 -1.0351 24 1 6.4122 -3.9848 2.0210 25 1 5.1422 -4.9616 2.4673 26 1 6.5431 -7.7080 -0.3741 27 1 3.3668 -3.6139 2.7752 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157306.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:38 Heat of formation + Delta-G solvation = 116.910969 kcal Electronic energy + Delta-G solvation = -12470.945090 eV Core-core repulsion = 10231.521808 eV Total energy + Delta-G solvation = -2239.423282 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.00841 -36.68645 -35.36351 -33.44260 -32.49952 -30.57844 -28.13435 -27.31653 -23.86280 -22.10269 -20.99508 -19.20986 -18.31792 -17.70871 -16.45722 -16.30695 -15.95153 -15.36472 -14.80113 -14.49603 -14.19604 -14.04456 -13.65632 -13.04133 -12.70232 -12.58851 -12.05045 -11.71393 -11.44617 -11.32305 -11.09153 -10.46909 -10.28463 -9.22137 -8.72489 -7.89713 -6.09665 0.96266 1.25958 1.46496 1.47274 1.54495 1.77208 2.03517 2.29444 2.54561 3.30823 3.33617 3.85262 4.12941 4.30412 4.37989 4.60098 4.80192 4.87956 4.95251 5.21973 5.66791 5.80402 5.84714 6.21557 6.32079 6.54905 6.74086 6.85237 7.22547 7.40736 7.62270 9.12792 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.041664 B = 0.008276 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.884225 B = 3382.610482 C = 3751.038806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.246 4.246 3 C 0.242 3.758 4 N -0.380 5.380 5 C 0.046 3.954 6 C -0.247 4.247 7 C 0.295 3.705 8 H 0.013 0.987 9 N -0.818 5.818 10 C -0.536 4.536 11 H 0.037 0.963 12 C 0.037 3.963 13 N -0.880 5.880 14 Si 0.941 3.059 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.277 1.277 18 C 0.043 3.957 19 N -0.324 5.324 20 H 0.249 0.751 21 H 0.121 0.879 22 H 0.149 0.851 23 H 0.195 0.805 24 H 0.310 0.690 25 H 0.321 0.679 26 H 0.254 0.746 27 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 12.633 -0.713 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.247 4.247 3 C 0.123 3.877 4 N -0.164 5.164 5 C -0.099 4.099 6 C -0.260 4.260 7 C 0.184 3.816 8 H 0.031 0.969 9 N -0.344 5.344 10 C -0.575 4.575 11 H 0.055 0.945 12 C -0.166 4.166 13 N -0.517 5.517 14 Si 0.768 3.232 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.203 1.203 18 C -0.143 4.143 19 N -0.146 5.146 20 H 0.266 0.734 21 H 0.139 0.861 22 H 0.166 0.834 23 H 0.211 0.789 24 H 0.121 0.879 25 H 0.133 0.867 26 H 0.063 0.937 27 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -6.742 12.870 -0.695 14.546 hybrid contribution -0.562 -0.767 -0.195 0.971 sum -7.305 12.103 -0.889 14.165 Atomic orbital electron populations 1.25821 0.96953 0.96435 0.98998 1.23463 0.95412 1.03507 1.02277 1.18785 0.84262 0.82552 1.02112 1.48689 1.36208 1.18520 1.12980 1.22673 0.96057 0.91139 1.00053 1.21783 1.07539 1.00429 0.96281 1.17138 0.88542 0.86961 0.88930 0.96915 1.59050 1.23818 1.44851 1.06658 1.21134 0.92588 0.97268 1.46542 0.94454 1.25607 0.95627 1.00457 0.94935 1.70206 1.09960 1.24727 1.46771 0.85916 0.78962 0.79672 0.78669 1.20110 1.21041 1.20270 1.23758 0.96040 0.94695 0.99794 1.77134 1.24480 1.12277 1.00667 0.73421 0.86124 0.83363 0.78853 0.87938 0.86747 0.93683 0.80323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 19.25 74.32 1.43 -2.21 15 2 C -0.25 -6.23 13.52 31.12 0.42 -5.81 15 3 C 0.24 5.45 6.99 84.57 0.59 6.04 15 4 N -0.38 -12.43 3.65 -357.15 -1.30 -13.73 15 5 C 0.05 1.62 11.36 83.54 0.95 2.57 15 6 C -0.25 -10.42 5.02 -20.14 -0.10 -10.53 15 7 C 0.30 14.67 3.06 43.43 0.13 14.80 15 8 H 0.01 0.70 8.14 -2.39 -0.02 0.68 15 9 N -0.82 -38.53 8.44 -174.95 -1.48 -40.00 15 10 C -0.54 -29.78 8.71 25.60 0.22 -29.56 15 11 H 0.04 2.12 7.74 -2.91 -0.02 2.10 15 12 C 0.04 2.07 5.39 84.65 0.46 2.53 15 13 N -0.88 -51.66 12.77 21.45 0.27 -51.39 15 14 Si 0.94 44.30 29.54 68.60 2.03 46.33 15 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 15 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 18 C 0.04 1.71 11.40 85.24 0.97 2.68 15 19 N -0.32 -12.40 12.39 -57.02 -0.71 -13.11 15 20 H 0.25 3.42 7.80 -4.43 -0.03 3.39 15 21 H 0.12 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.15 2.25 8.07 -2.38 -0.02 2.23 15 23 H 0.19 5.62 8.06 -2.91 -0.02 5.59 15 24 H 0.31 13.06 9.06 -89.69 -0.81 12.25 15 25 H 0.32 14.42 8.19 -89.69 -0.74 13.68 15 26 H 0.25 14.31 8.31 -92.71 -0.77 13.54 15 27 H 0.18 6.64 7.67 -2.91 -0.02 6.62 15 Total: -1.00 -69.23 253.98 3.53 -65.70 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.36 Total: 25.69 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 5.07 Total: -19.49 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -3.21 Total: -118.24 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.23 3.53 -65.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157306.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.615 kcal (2) G-P(sol) polarization free energy of solvation -69.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds