Wall clock time and date at job start Mon Mar 30 2020 02:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38221 * 119.62037 * 2 1 4 4 C 1.38628 * 119.16235 * 180.02562 * 3 2 1 5 5 C 1.38671 * 118.42100 * 359.74403 * 4 3 2 6 6 C 1.38182 * 119.16115 * 0.49818 * 5 4 3 7 7 C 1.50700 * 119.61503 * 179.76748 * 6 5 4 8 8 C 1.52996 * 109.47211 * 44.72929 * 7 6 5 9 9 C 1.53000 * 109.47313 * 284.72597 * 7 6 5 10 10 C 1.50702 * 109.46869 * 164.72485 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 N 1.31859 * 119.61626 * 180.02562 * 2 1 3 19 19 H 1.08998 * 109.46514 * 269.97743 * 1 2 3 20 20 H 1.08993 * 109.46807 * 29.97923 * 1 2 3 21 21 H 1.08997 * 109.46869 * 149.98264 * 1 2 3 22 22 H 1.07997 * 120.41790 * 0.02562 * 3 2 1 23 23 H 1.08008 * 120.79158 * 180.02562 * 4 3 2 24 24 H 1.08000 * 120.41833 * 180.24199 * 5 4 3 25 25 H 1.09001 * 109.47094 * 179.97438 * 8 7 6 26 26 H 1.09003 * 109.46851 * 299.99806 * 8 7 6 27 27 H 1.09003 * 109.47532 * 59.99881 * 8 7 6 28 28 H 1.09004 * 109.47084 * 299.99675 * 9 7 6 29 29 H 1.08994 * 109.47175 * 60.00247 * 9 7 6 30 30 H 1.09001 * 109.47192 * 180.02562 * 9 7 6 31 31 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2266 -0.0343 0.0044 6 6 3.4766 -1.1948 -0.0009 7 6 4.1727 -2.5314 -0.0009 8 6 5.3133 -2.5125 1.0187 9 6 4.7389 -2.8116 -1.3944 10 6 3.1876 -3.6108 0.3674 11 1 2.1602 -3.3546 0.5799 12 6 3.5966 -4.9262 0.4272 13 7 4.8476 -5.2382 0.1681 14 14 2.3737 -6.2650 0.8762 15 1 1.2678 -6.2779 -0.1147 16 1 3.0585 -7.5827 0.8715 17 1 1.8229 -5.9988 2.2294 18 7 2.1586 -1.1463 -0.0005 19 1 -0.3632 -0.0004 1.0277 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8898 -0.5141 22 1 1.6508 2.1372 0.0004 23 1 4.1367 2.1139 -0.0001 24 1 5.3056 -0.0806 0.0081 25 1 5.8165 -3.4794 1.0189 26 1 6.0258 -1.7318 0.7523 27 1 4.9100 -2.3129 2.0115 28 1 3.9262 -2.8252 -2.1208 29 1 5.4514 -2.0310 -1.6608 30 1 5.2420 -3.7786 -1.3945 31 1 5.1354 -6.1636 0.2105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261159593.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:01 Heat of formation + Delta-G solvation = 25.215030 kcal Electronic energy + Delta-G solvation = -13344.901574 eV Core-core repulsion = 11205.042400 eV Total energy + Delta-G solvation = -2139.859173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.65091 -35.52534 -32.38196 -31.67700 -30.13679 -26.81015 -25.62428 -25.02928 -22.89679 -21.48462 -18.90187 -16.35539 -15.84762 -15.09408 -14.71828 -13.93150 -13.86835 -13.04206 -12.68267 -12.37987 -12.23428 -11.86422 -11.62968 -11.44445 -10.93826 -10.86800 -10.57291 -10.47373 -10.11944 -9.75247 -9.58317 -9.09143 -8.87200 -8.27936 -8.21021 -7.99259 -5.86230 -3.90915 1.83328 2.00312 3.40933 3.43925 3.48956 4.51876 4.56192 4.97407 5.22381 5.41599 5.50903 5.59140 5.83494 5.93824 5.97750 6.11187 6.39076 6.47543 6.68936 6.73815 6.83336 6.88716 6.98026 7.02299 7.33514 7.49450 7.58905 7.87989 8.03523 8.24908 8.52196 9.01198 9.16791 9.73172 11.16865 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.011796 C = 0.009497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.172175 B = 2373.038939 C = 2947.636012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.116 3.884 3 C -0.206 4.206 4 C -0.082 4.082 5 C -0.191 4.191 6 C 0.185 3.815 7 C 0.101 3.899 8 C -0.128 4.128 9 C -0.124 4.124 10 C -0.484 4.484 11 H 0.075 0.925 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.894 3.106 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.279 1.279 18 N -0.461 5.461 19 H 0.071 0.929 20 H 0.065 0.935 21 H 0.074 0.926 22 H 0.119 0.881 23 H 0.121 0.879 24 H 0.128 0.872 25 H 0.092 0.908 26 H 0.012 0.988 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.009 0.991 30 H 0.092 0.908 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 9.632 -0.493 10.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.023 4.023 3 C -0.226 4.226 4 C -0.108 4.108 5 C -0.211 4.211 6 C 0.047 3.953 7 C 0.100 3.900 8 C -0.186 4.186 9 C -0.182 4.182 10 C -0.523 4.523 11 H 0.093 0.907 12 C -0.142 4.142 13 N -0.538 5.538 14 Si 0.723 3.277 15 H -0.204 1.204 16 H -0.216 1.216 17 H -0.205 1.205 18 N -0.170 5.170 19 H 0.089 0.911 20 H 0.084 0.916 21 H 0.093 0.907 22 H 0.137 0.863 23 H 0.139 0.861 24 H 0.146 0.854 25 H 0.110 0.890 26 H 0.031 0.969 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.067 8.691 -0.500 9.230 hybrid contribution -0.102 0.208 0.258 0.346 sum -3.169 8.899 -0.242 9.449 Atomic orbital electron populations 1.20632 0.89941 1.02662 1.02397 1.21384 0.96767 0.88931 0.95206 1.21694 0.94919 0.98630 1.07344 1.21413 0.94398 0.97812 0.97139 1.22063 1.01433 0.93165 1.04468 1.22172 0.88616 0.96740 0.87753 1.17305 0.92707 0.86478 0.93490 1.21870 0.97423 1.01918 0.97384 1.21788 0.98305 1.02090 0.96016 1.21207 0.96382 0.90166 1.44520 0.90731 1.24934 0.95165 0.98516 0.95634 1.69791 1.15250 1.18055 1.50700 0.86623 0.81376 0.80782 0.78953 1.20413 1.21615 1.20525 1.67611 1.10422 1.27320 1.11628 0.91082 0.91632 0.90656 0.86254 0.86081 0.85434 0.88983 0.96907 0.95474 0.95419 0.97176 0.88914 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 10.17 36.01 0.37 -1.08 16 2 C 0.12 2.16 6.78 -82.59 -0.56 1.60 16 3 C -0.21 -3.36 9.74 -39.44 -0.38 -3.74 16 4 C -0.08 -1.35 10.18 -39.28 -0.40 -1.75 16 5 C -0.19 -3.73 9.09 -39.44 -0.36 -4.08 16 6 C 0.18 4.25 5.55 -82.59 -0.46 3.79 16 7 C 0.10 2.54 0.60 -156.81 -0.09 2.45 16 8 C -0.13 -3.07 7.86 37.16 0.29 -2.78 16 9 C -0.12 -3.03 8.18 37.16 0.30 -2.72 16 10 C -0.48 -13.49 7.78 -34.44 -0.27 -13.76 16 11 H 0.07 2.15 6.69 -52.49 -0.35 1.80 16 12 C 0.06 1.56 5.15 -17.82 -0.09 1.47 16 13 N -0.90 -24.92 9.35 55.43 0.52 -24.40 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 N -0.46 -10.58 8.51 -5.74 -0.05 -10.63 16 19 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 20 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 21 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 23 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 24 H 0.13 2.30 6.71 -52.49 -0.35 1.94 16 25 H 0.09 2.39 6.08 -51.93 -0.32 2.07 16 26 H 0.01 0.26 6.69 -51.93 -0.35 -0.09 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.01 0.20 8.09 -51.93 -0.42 -0.22 16 30 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 255.19 15.07 3.85 3.85 Total: -1.00 -29.32 255.19 -6.55 -35.87 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -4.19 Total: -0.92 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -1.65 Total: -20.59 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.47 Total: -35.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.32 -6.55 -35.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159593.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.083 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds