Wall clock time and date at job start Mon Mar 30 2020 02:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38221 * 119.62037 * 2 1 4 4 C 1.38628 * 119.16235 * 180.02562 * 3 2 1 5 5 C 1.38671 * 118.42100 * 359.74403 * 4 3 2 6 6 C 1.38182 * 119.16115 * 0.49818 * 5 4 3 7 7 C 1.50700 * 119.61503 * 179.76748 * 6 5 4 8 8 C 1.52996 * 109.47211 * 44.72929 * 7 6 5 9 9 C 1.53000 * 109.47313 * 284.72597 * 7 6 5 10 10 C 1.50702 * 109.46869 * 164.72485 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 N 1.31859 * 119.61626 * 180.02562 * 2 1 3 19 19 H 1.08998 * 109.46514 * 269.97743 * 1 2 3 20 20 H 1.08993 * 109.46807 * 29.97923 * 1 2 3 21 21 H 1.08997 * 109.46869 * 149.98264 * 1 2 3 22 22 H 1.07997 * 120.41790 * 0.02562 * 3 2 1 23 23 H 1.08008 * 120.79158 * 180.02562 * 4 3 2 24 24 H 1.08000 * 120.41833 * 180.24199 * 5 4 3 25 25 H 1.09001 * 109.47094 * 179.97438 * 8 7 6 26 26 H 1.09003 * 109.46851 * 299.99806 * 8 7 6 27 27 H 1.09003 * 109.47532 * 59.99881 * 8 7 6 28 28 H 1.09004 * 109.47084 * 299.99675 * 9 7 6 29 29 H 1.08994 * 109.47175 * 60.00247 * 9 7 6 30 30 H 1.09001 * 109.47192 * 180.02562 * 9 7 6 31 31 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2266 -0.0343 0.0044 6 6 3.4766 -1.1948 -0.0009 7 6 4.1727 -2.5314 -0.0009 8 6 5.3133 -2.5125 1.0187 9 6 4.7389 -2.8116 -1.3944 10 6 3.1876 -3.6108 0.3674 11 1 2.1602 -3.3546 0.5799 12 6 3.5966 -4.9262 0.4272 13 7 4.8476 -5.2382 0.1681 14 14 2.3737 -6.2650 0.8762 15 1 1.2678 -6.2779 -0.1147 16 1 3.0585 -7.5827 0.8715 17 1 1.8229 -5.9988 2.2294 18 7 2.1586 -1.1463 -0.0005 19 1 -0.3632 -0.0004 1.0277 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8898 -0.5141 22 1 1.6508 2.1372 0.0004 23 1 4.1367 2.1139 -0.0001 24 1 5.3056 -0.0806 0.0081 25 1 5.8165 -3.4794 1.0189 26 1 6.0258 -1.7318 0.7523 27 1 4.9100 -2.3129 2.0115 28 1 3.9262 -2.8252 -2.1208 29 1 5.4514 -2.0310 -1.6608 30 1 5.2420 -3.7786 -1.3945 31 1 5.1354 -6.1636 0.2105 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261159593.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:00 Heat of formation + Delta-G solvation = 8.495592 kcal Electronic energy + Delta-G solvation = -13345.626583 eV Core-core repulsion = 11205.042400 eV Total energy + Delta-G solvation = -2140.584183 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.12243 -37.33846 -33.96869 -33.29298 -31.79844 -28.21311 -27.53764 -27.05400 -24.46833 -22.89800 -20.67586 -18.18392 -17.35450 -16.76912 -16.48596 -15.53834 -15.29182 -14.70168 -14.46601 -13.83571 -13.73508 -13.41082 -13.17277 -12.97980 -12.78744 -12.60291 -12.52269 -12.33565 -12.09338 -11.67460 -11.44614 -10.77845 -10.54488 -10.33746 -9.83470 -9.45212 -7.95211 -6.05606 0.41316 0.63483 1.42816 1.43554 1.51434 2.49905 3.07944 3.29224 3.61625 4.03297 4.14806 4.36462 4.48570 4.73319 4.75963 4.83077 4.85590 4.90290 4.93850 5.09070 5.15859 5.26175 5.35367 5.41091 5.52026 5.61571 5.75322 6.07060 6.10952 6.20651 6.54289 6.99606 7.49623 7.64211 9.05040 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.035789 B = 0.011796 C = 0.009497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.172175 B = 2373.038939 C = 2947.636012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.094 3.906 3 C -0.192 4.192 4 C -0.073 4.073 5 C -0.201 4.201 6 C 0.148 3.852 7 C 0.091 3.909 8 C -0.116 4.116 9 C -0.112 4.112 10 C -0.501 4.501 11 H 0.055 0.945 12 C 0.016 3.984 13 N -0.911 5.911 14 Si 0.944 3.056 15 H -0.280 1.280 16 H -0.282 1.282 17 H -0.279 1.279 18 N -0.509 5.509 19 H 0.081 0.919 20 H 0.102 0.898 21 H 0.058 0.942 22 H 0.165 0.835 23 H 0.166 0.834 24 H 0.138 0.862 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 12.026 -0.438 12.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.045 4.045 3 C -0.211 4.211 4 C -0.098 4.098 5 C -0.221 4.221 6 C 0.011 3.989 7 C 0.090 3.910 8 C -0.174 4.174 9 C -0.170 4.170 10 C -0.540 4.540 11 H 0.074 0.926 12 C -0.181 4.181 13 N -0.552 5.552 14 Si 0.772 3.228 15 H -0.206 1.206 16 H -0.208 1.208 17 H -0.205 1.205 18 N -0.219 5.219 19 H 0.099 0.901 20 H 0.121 0.879 21 H 0.077 0.923 22 H 0.182 0.818 23 H 0.184 0.816 24 H 0.155 0.845 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.030 0.970 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.548 11.085 -0.446 11.647 hybrid contribution -0.006 -0.428 0.233 0.488 sum -3.555 10.656 -0.212 11.236 Atomic orbital electron populations 1.20723 0.87556 1.03668 1.03348 1.22066 0.98557 0.88891 0.94949 1.22182 0.95157 0.99372 1.04410 1.21909 0.94860 0.98221 0.94845 1.22164 1.01870 0.93331 1.04733 1.21852 0.89271 0.96671 0.91090 1.17272 0.92647 0.87674 0.93423 1.21684 0.97539 1.01427 0.96712 1.21611 0.97939 1.01604 0.95851 1.21397 0.96279 0.91545 1.44730 0.92642 1.25526 0.96618 1.00118 0.95870 1.69902 1.16065 1.18190 1.50998 0.85831 0.79623 0.78940 0.78427 1.20584 1.20787 1.20501 1.67459 1.10891 1.30169 1.13339 0.90054 0.87945 0.92322 0.81794 0.81615 0.84455 0.91389 0.94130 0.96528 0.96979 0.94815 0.91166 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.59 10.17 71.24 0.72 -1.86 16 2 C 0.09 3.33 6.78 42.55 0.29 3.61 16 3 C -0.19 -5.44 9.74 22.36 0.22 -5.22 16 4 C -0.07 -2.10 10.18 22.47 0.23 -1.87 16 5 C -0.20 -7.42 9.09 22.36 0.20 -7.22 16 6 C 0.15 6.80 5.55 42.54 0.24 7.04 16 7 C 0.09 4.64 0.60 -53.67 -0.03 4.61 16 8 C -0.12 -5.60 7.86 71.98 0.57 -5.03 16 9 C -0.11 -5.57 8.18 71.98 0.59 -4.98 16 10 C -0.50 -28.76 7.78 25.60 0.20 -28.56 16 11 H 0.06 3.33 6.69 -2.91 -0.02 3.31 16 12 C 0.02 0.91 5.15 84.66 0.44 1.35 16 13 N -0.91 -51.70 9.35 21.45 0.20 -51.50 16 14 Si 0.94 45.71 29.54 68.60 2.03 47.74 16 15 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 17 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 18 N -0.51 -23.41 8.51 -172.08 -1.46 -24.87 16 19 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 20 H 0.10 1.96 8.08 -2.39 -0.02 1.94 16 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 23 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 24 H 0.14 4.62 6.71 -2.91 -0.02 4.60 16 25 H 0.07 3.60 6.08 -2.39 -0.01 3.58 16 26 H 0.04 1.67 6.69 -2.39 -0.02 1.66 16 27 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 28 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16 30 H 0.07 3.78 6.06 -2.39 -0.01 3.76 16 31 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -65.28 255.19 5.52 -59.76 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.10 Total: 7.02 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 3.66 Total: -38.15 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -1.26 Total: -76.37 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -65.28 5.52 -59.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159593.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.257 kcal (2) G-P(sol) polarization free energy of solvation -65.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds