Wall clock time and date at job start Mon Mar 30 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31817 * 119.05403 * 2 1 4 4 C 1.32459 * 120.82632 * 179.97438 * 3 2 1 5 5 C 1.38250 * 118.85578 * 0.02562 * 4 3 2 6 6 C 1.38650 * 118.70284 * 0.02562 * 5 4 3 7 7 N 1.31881 * 119.05320 * 179.97438 * 2 1 3 8 8 C 1.50994 * 108.18174 * 179.97438 * 6 5 4 9 9 N 1.48306 * 105.73341 * 17.39796 * 8 6 5 10 10 C 1.48130 * 103.83786 * 332.58839 * 9 8 6 11 11 H 1.09002 * 110.21268 * 268.30010 * 10 9 8 12 12 C 1.50700 * 110.20747 * 146.47564 * 10 9 8 13 13 H 1.08006 * 120.00015 * 242.53643 * 12 10 9 14 14 C 1.37872 * 120.00018 * 62.54764 * 12 10 9 15 15 N 1.31517 * 120.00006 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00010 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47363 * 59.99086 * 16 14 12 18 18 H 1.48502 * 109.47022 * 179.97438 * 16 14 12 19 19 H 1.48510 * 109.46787 * 299.99231 * 16 14 12 20 20 H 1.08999 * 109.47803 * 90.00448 * 1 2 3 21 21 H 1.09008 * 109.47024 * 210.00202 * 1 2 3 22 22 H 1.09003 * 109.47539 * 329.99912 * 1 2 3 23 23 H 1.07997 * 120.57527 * 179.97438 * 4 3 2 24 24 H 1.09004 * 110.19844 * 136.44637 * 8 6 5 25 25 H 1.08995 * 110.20142 * 258.24214 * 8 6 5 26 26 H 1.00901 * 111.06977 * 213.22027 * 9 8 6 27 27 H 0.97002 * 119.99906 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1472 1.1523 0.0000 4 6 3.4711 1.1933 0.0005 5 6 4.1754 0.0036 0.0005 6 6 3.4682 -1.1889 -0.0006 7 7 2.1474 -1.1529 0.0005 8 6 4.4618 -2.3259 -0.0010 9 7 5.7520 -1.7327 0.4267 10 6 5.6496 -0.3175 0.0013 11 1 6.0623 -0.1944 -1.0000 12 6 6.3759 0.5730 0.9762 13 1 5.8312 1.3203 1.5342 14 6 7.7358 0.4339 1.1557 15 7 8.3991 -0.4762 0.4765 16 14 8.6360 1.5373 2.3647 17 1 8.0729 1.3443 3.7250 18 1 10.0795 1.1887 2.3728 19 1 8.4712 2.9560 1.9574 20 1 -0.3635 -0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 3.9914 2.1396 0.0001 24 1 4.1509 -3.0977 0.7032 25 1 4.5529 -2.7458 -1.0027 26 1 6.5293 -2.1907 -0.0250 27 1 9.3558 -0.5743 0.6030 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261164568.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:02 Heat of formation + Delta-G solvation = 36.265931 kcal Electronic energy + Delta-G solvation = -12880.946439 eV Core-core repulsion = 10638.026125 eV Total energy + Delta-G solvation = -2242.920314 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.34135 -38.51947 -35.01772 -34.28649 -32.82676 -30.38906 -28.59168 -26.51982 -25.13641 -22.70138 -22.16946 -19.11609 -18.14743 -17.29612 -16.65551 -16.53841 -15.71132 -15.25585 -14.72874 -14.31289 -14.16291 -13.76674 -13.53954 -13.28391 -13.13926 -12.92901 -12.70776 -12.30782 -11.70603 -11.53090 -11.38753 -10.62213 -10.31259 -10.17058 -9.02775 -8.16168 -6.26760 -0.03731 0.04604 1.45405 1.47410 1.54067 2.43724 2.66030 2.73793 3.07631 3.14444 3.67031 3.76718 3.93356 4.09008 4.37118 4.53454 4.69568 4.70451 4.75499 4.96598 5.04339 5.07270 5.50104 5.71421 5.92255 5.99281 6.27587 6.70750 6.78241 7.09256 7.42949 8.93438 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.049806 B = 0.009823 C = 0.008557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.050148 B = 2849.632846 C = 3271.530787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.284 3.716 3 N -0.527 5.527 4 C 0.156 3.844 5 C -0.195 4.195 6 C 0.143 3.857 7 N -0.521 5.521 8 C 0.087 3.913 9 N -0.648 5.648 10 C 0.244 3.756 11 H 0.007 0.993 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.033 3.967 15 N -0.908 5.908 16 Si 0.958 3.042 17 H -0.279 1.279 18 H -0.282 1.282 19 H -0.268 1.268 20 H 0.100 0.900 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.178 0.822 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.348 0.652 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.451 -0.271 -1.829 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.017 3.983 3 N -0.242 5.242 4 C -0.008 4.008 5 C -0.200 4.200 6 C -0.005 4.005 7 N -0.236 5.236 8 C -0.043 4.043 9 N -0.279 5.279 10 C 0.136 3.864 11 H 0.024 0.976 12 C -0.562 4.562 13 H 0.072 0.928 14 C -0.168 4.168 15 N -0.546 5.546 16 Si 0.784 3.216 17 H -0.205 1.205 18 H -0.208 1.208 19 H -0.193 1.193 20 H 0.118 0.882 21 H 0.113 0.887 22 H 0.114 0.886 23 H 0.195 0.805 24 H 0.120 0.880 25 H 0.093 0.907 26 H 0.165 0.835 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.415 -0.263 -1.141 10.481 hybrid contribution 1.925 0.395 -0.427 2.011 sum -8.490 0.132 -1.568 8.635 Atomic orbital electron populations 1.20621 0.82391 1.04986 1.04979 1.24102 0.99842 0.82728 0.91630 1.68420 1.09237 1.30574 1.15970 1.22758 0.88970 0.98529 0.90520 1.22734 1.00382 0.96239 1.00656 1.22528 0.90251 0.96976 0.90736 1.67458 1.08557 1.31489 1.16143 1.21503 0.88306 0.93516 1.01016 1.64017 1.01743 1.03548 1.58604 1.18332 0.85589 0.87819 0.94680 0.97579 1.21073 0.92931 1.17323 1.24922 0.92820 1.25612 0.98038 0.96303 0.96873 1.69904 1.08806 1.34266 1.41657 0.85621 0.77276 0.79360 0.79347 1.20453 1.20773 1.19349 0.88154 0.88745 0.88553 0.80543 0.87972 0.90650 0.83458 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 10.32 71.24 0.73 -0.90 15 2 C 0.28 9.86 7.64 138.72 1.06 10.92 15 3 N -0.53 -19.72 10.34 -187.96 -1.94 -21.66 15 4 C 0.16 6.31 11.02 84.60 0.93 7.25 15 5 C -0.20 -8.69 5.69 -19.71 -0.11 -8.80 15 6 C 0.14 5.92 7.50 42.71 0.32 6.24 15 7 N -0.52 -19.90 10.34 -175.75 -1.82 -21.72 15 8 C 0.09 3.31 7.46 85.38 0.64 3.95 15 9 N -0.65 -29.92 7.02 -496.33 -3.48 -33.41 15 10 C 0.24 12.09 3.03 43.24 0.13 12.22 15 11 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 12 C -0.52 -28.11 8.71 25.60 0.22 -27.89 15 13 H 0.05 2.87 7.61 -2.91 -0.02 2.84 15 14 C 0.03 1.77 5.41 84.65 0.46 2.23 15 15 N -0.91 -49.42 12.49 21.45 0.27 -49.15 15 16 Si 0.96 42.49 29.54 68.60 2.03 44.51 15 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 20 H 0.10 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.09 1.91 8.14 -2.38 -0.02 1.89 15 22 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.18 6.52 8.06 -2.91 -0.02 6.49 15 24 H 0.10 3.57 8.14 -2.39 -0.02 3.55 15 25 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 26 H 0.35 16.08 8.36 -89.69 -0.75 15.33 15 27 H 0.27 13.80 8.31 -92.71 -0.77 13.03 15 Total: -1.00 -60.31 239.02 -0.13 -60.44 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.44 Total: 15.78 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 4.38 Total: 5.21 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -6.98 Total: -125.94 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -60.31 -0.13 -60.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164568.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.701 kcal (2) G-P(sol) polarization free energy of solvation -60.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds