Wall clock time and date at job start Mon Mar 30 2020 02:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99976 * 2 1 4 4 H 1.48498 * 109.47001 * 239.99681 * 3 2 1 5 5 H 1.48500 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47428 * 119.99627 * 3 2 1 7 7 C 1.37877 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99849 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00207 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.26579 * 57.93380 * 9 7 2 11 11 C 1.54395 * 110.30044 * 179.97438 * 9 7 2 12 12 C 1.54417 * 102.45096 * 145.10054 * 11 9 7 13 13 C 1.51087 * 105.14890 * 333.84679 * 12 11 9 14 14 C 1.38604 * 131.42426 * 197.03265 * 13 12 11 15 15 N 1.32276 * 119.15026 * 180.02562 * 14 13 12 16 16 C 1.32514 * 120.69120 * 0.02562 * 15 14 13 17 17 N 1.38398 * 119.19541 * 180.02562 * 16 15 14 18 18 N 1.32455 * 121.61070 * 359.97438 * 16 15 14 19 19 C 1.32411 * 120.74990 * 359.97438 * 18 16 15 20 20 H 0.97000 * 120.00554 * 0.02562 * 1 2 3 21 21 H 1.09003 * 110.80971 * 26.86219 * 11 9 7 22 22 H 1.08999 * 110.98427 * 263.41388 * 11 9 7 23 23 H 1.09000 * 110.30658 * 92.76387 * 12 11 9 24 24 H 1.08998 * 110.30811 * 214.93292 * 12 11 9 25 25 H 1.07995 * 120.42382 * 0.02562 * 14 13 12 26 26 H 0.96999 * 119.99779 * 179.97438 * 17 16 15 27 27 H 0.97004 * 119.99793 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5925 -2.5549 -0.8663 11 6 2.2373 -3.6870 0.0005 12 6 1.4985 -4.7331 0.8632 13 6 0.5979 -3.9301 1.7725 14 6 -0.0587 -4.2688 2.9452 15 7 -0.7998 -3.3584 3.5548 16 6 -0.9171 -2.1367 3.0552 17 7 -1.7001 -1.2083 3.7188 18 7 -0.3025 -1.7820 1.9368 19 6 0.4553 -2.6450 1.2778 20 1 -0.4851 0.8400 -0.0004 21 1 3.1840 -3.4043 0.4609 22 1 2.3968 -4.0619 -1.0105 23 1 0.9055 -5.3940 0.2311 24 1 2.2119 -5.3104 1.4513 25 1 0.0336 -5.2634 3.3559 26 1 -1.7938 -0.3105 3.3637 27 1 -2.1551 -1.4554 4.5391 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261237203.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:16 Heat of formation + Delta-G solvation = 33.671113 kcal Electronic energy + Delta-G solvation = -13174.358183 eV Core-core repulsion = 10931.325350 eV Total energy + Delta-G solvation = -2243.032833 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.77894 -38.02566 -35.20381 -34.14506 -33.60707 -30.30639 -28.57454 -25.87840 -24.61814 -22.61595 -21.29047 -19.01625 -18.46425 -17.73744 -16.54938 -16.29678 -16.07369 -15.33635 -14.90645 -14.58214 -13.96745 -13.59318 -13.47419 -12.80873 -12.67298 -12.40567 -12.03629 -11.84741 -11.44886 -11.34932 -11.02238 -10.56444 -10.40478 -9.42824 -8.77972 -7.96370 -6.09619 0.58021 0.67474 1.42458 1.43524 1.49759 2.47989 2.50433 3.25037 3.39001 3.59406 3.97107 4.12198 4.28869 4.42800 4.53053 4.85873 5.06436 5.19785 5.27630 5.40011 5.47249 5.69701 5.77795 5.89702 6.23271 6.36157 6.64266 6.77840 6.93388 7.55110 7.90501 9.06902 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.015093 C = 0.010742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.454197 B = 1854.719809 C = 2605.992019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.031 3.969 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.554 4.554 8 H 0.054 0.946 9 C 0.072 3.928 10 H 0.021 0.979 11 C -0.105 4.105 12 C -0.046 4.046 13 C -0.297 4.297 14 C 0.179 3.821 15 N -0.597 5.597 16 C 0.519 3.481 17 N -0.818 5.818 18 N -0.536 5.536 19 C 0.226 3.774 20 H 0.254 0.746 21 H 0.061 0.939 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.196 0.804 26 H 0.412 0.588 27 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -6.898 4.316 8.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.174 4.174 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.592 4.592 8 H 0.072 0.928 9 C 0.053 3.947 10 H 0.039 0.961 11 C -0.143 4.143 12 C -0.084 4.084 13 C -0.305 4.305 14 C 0.013 3.987 15 N -0.321 5.321 16 C 0.160 3.840 17 N -0.369 5.369 18 N -0.257 5.257 19 C 0.077 3.923 20 H 0.063 0.937 21 H 0.079 0.921 22 H 0.102 0.898 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.213 0.787 26 H 0.242 0.758 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -0.697 -6.102 4.791 7.789 hybrid contribution 0.400 1.081 -0.215 1.173 sum -0.297 -5.021 4.576 6.800 Atomic orbital electron populations 1.70162 1.06605 1.26283 1.46182 1.25626 0.95513 1.01669 0.94622 0.85865 0.78541 0.80220 0.78326 1.19382 1.21164 1.20935 1.21167 0.92553 0.91061 1.54445 0.92751 1.18430 0.92344 0.95249 0.88675 0.96084 1.22330 0.97614 0.94059 1.00312 1.20693 0.96122 0.96228 0.95361 1.22387 1.07804 0.99006 1.01276 1.22744 0.88094 0.98430 0.89393 1.67899 1.25466 1.02396 1.36344 1.19995 0.89566 0.87007 0.87465 1.41466 1.53253 1.12930 1.29251 1.67556 1.12346 1.38573 1.07179 1.22993 0.86250 0.87584 0.95432 0.93680 0.92051 0.89751 0.89498 0.88849 0.78696 0.75761 0.75057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.23 11.26 21.45 0.24 -49.98 15 2 C 0.03 1.72 5.21 84.65 0.44 2.16 15 3 Si 0.94 44.65 29.54 68.60 2.03 46.68 15 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 6 H -0.28 -13.44 7.11 99.48 0.71 -12.73 15 7 C -0.55 -30.88 8.50 25.60 0.22 -30.66 15 8 H 0.05 2.96 7.61 -2.91 -0.02 2.94 15 9 C 0.07 3.64 2.76 -11.66 -0.03 3.60 15 10 H 0.02 1.18 8.14 -2.39 -0.02 1.16 15 11 C -0.11 -4.00 6.57 31.55 0.21 -3.79 15 12 C -0.05 -1.46 6.77 30.45 0.21 -1.26 15 13 C -0.30 -11.89 6.20 -19.61 -0.12 -12.01 15 14 C 0.18 6.42 11.30 84.71 0.96 7.38 15 15 N -0.60 -24.00 10.46 -198.01 -2.07 -26.07 15 16 C 0.52 23.08 8.67 261.50 2.27 25.35 15 17 N -0.82 -28.91 9.07 -59.77 -0.54 -29.45 15 18 N -0.54 -27.86 8.46 -185.61 -1.57 -29.42 15 19 C 0.23 11.34 6.39 42.68 0.27 11.61 15 20 H 0.25 14.35 8.31 -92.71 -0.77 13.58 15 21 H 0.06 2.34 7.77 -2.39 -0.02 2.33 15 22 H 0.08 2.79 8.14 -2.39 -0.02 2.77 15 23 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.09 2.37 8.14 -2.39 -0.02 2.36 15 25 H 0.20 4.96 8.06 -2.91 -0.02 4.94 15 26 H 0.41 14.27 8.94 -92.71 -0.83 13.44 15 27 H 0.42 11.74 8.94 -92.70 -0.83 10.91 15 Total: -1.00 -67.92 234.67 2.05 -65.87 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.45 Total: 20.01 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 4.42 Total: 2.38 kcal Atomic # 7 Polarization: -131.00 SS G_CDS: -3.94 Total: -134.94 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.92 2.05 -65.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237203.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.540 kcal (2) G-P(sol) polarization free energy of solvation -67.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds