Wall clock time and date at job start Mon Mar 30 2020 02:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00049 * 2 1 4 4 H 1.48495 * 109.47307 * 240.00150 * 3 2 1 5 5 H 1.48503 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46748 * 120.00154 * 3 2 1 7 7 C 1.37874 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00160 * 359.97438 * 7 2 1 10 10 F 1.39898 * 109.46887 * 60.00243 * 9 7 2 11 11 F 1.39903 * 109.46802 * 300.00066 * 9 7 2 12 12 C 1.52994 * 109.46848 * 180.02562 * 9 7 2 13 13 H 1.09005 * 109.50824 * 55.08199 * 12 9 7 14 14 C 1.53129 * 109.50247 * 175.15722 * 12 9 7 15 15 C 1.53123 * 109.15931 * 177.55401 * 14 12 9 16 16 C 1.53039 * 109.31189 * 302.40768 * 15 14 12 17 17 N 1.46842 * 109.52266 * 59.15550 * 16 15 14 18 18 C 1.46849 * 111.20050 * 298.25785 * 17 16 15 19 19 H 0.97005 * 120.00275 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.49266 * 57.67092 * 14 12 9 21 21 H 1.08995 * 109.55725 * 297.47838 * 14 12 9 22 22 H 1.09002 * 109.50371 * 182.44317 * 15 14 12 23 23 H 1.09003 * 109.50070 * 62.36477 * 15 14 12 24 24 H 1.08995 * 109.46501 * 179.17754 * 16 15 14 25 25 H 1.09009 * 109.45500 * 299.14277 * 16 15 14 26 26 H 1.00898 * 111.00242 * 62.36287 * 17 16 15 27 27 H 1.09001 * 109.46071 * 181.75754 * 18 17 16 28 28 H 1.08995 * 109.46417 * 301.72694 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 9 0.4462 -2.5730 -1.1425 11 9 0.4470 -2.5735 1.1421 12 6 2.2452 -3.6620 -0.0005 13 1 2.9287 -3.5565 0.8420 14 6 1.4842 -4.9853 0.1213 15 6 2.4811 -6.1458 0.0591 16 6 3.2698 -6.0660 -1.2501 17 7 3.9802 -4.7826 -1.3174 18 6 3.0405 -3.6542 -1.3080 19 1 -0.4851 0.8401 0.0004 20 1 0.7722 -5.0723 -0.6994 21 1 0.9513 -5.0135 1.0717 22 1 1.9414 -7.0919 0.1017 23 1 3.1686 -6.0807 0.9025 24 1 3.9904 -6.8827 -1.2904 25 1 2.5831 -6.1457 -2.0930 26 1 4.6511 -4.7009 -0.5682 27 1 3.5948 -2.7193 -1.3902 28 1 2.3551 -3.7453 -2.1506 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261256894.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:14 Heat of formation + Delta-G solvation = -144.579458 kcal Electronic energy + Delta-G solvation = -14269.372890 eV Core-core repulsion = 11567.921345 eV Total energy + Delta-G solvation = -2701.451545 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.97426 -46.99960 -39.58875 -34.98648 -33.14843 -32.32919 -28.66314 -25.23275 -24.48357 -22.41338 -21.07036 -19.18971 -17.63261 -17.45811 -16.69051 -16.33506 -15.81773 -15.64815 -15.38077 -14.16215 -13.95837 -13.88507 -13.73906 -13.46370 -13.20771 -12.96731 -12.81219 -12.51099 -12.30312 -12.18891 -12.02855 -11.72301 -11.57925 -10.90411 -10.59158 -9.30641 -8.35755 -6.70943 1.38815 1.43293 1.51494 2.29951 2.95062 3.28185 3.62874 3.74860 3.93368 4.09370 4.20667 4.37626 4.53356 4.60648 4.78561 4.90623 4.97284 5.02547 5.12566 5.21196 5.30262 5.49836 5.53135 5.59447 6.03680 6.42778 6.53919 7.14918 8.70089 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.049408 B = 0.011621 C = 0.010334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.577493 B = 2408.934420 C = 2708.742894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.024 3.976 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.608 4.608 8 H 0.091 0.909 9 C 0.383 3.617 10 F -0.241 7.241 11 F -0.246 7.246 12 C -0.139 4.139 13 H 0.084 0.916 14 C -0.119 4.119 15 C -0.142 4.142 16 C 0.054 3.946 17 N -0.681 5.681 18 C 0.083 3.917 19 H 0.271 0.729 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.064 0.936 26 H 0.348 0.652 27 H 0.076 0.924 28 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 -8.535 -0.445 11.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.645 4.645 8 H 0.109 0.891 9 C 0.347 3.653 10 F -0.223 7.223 11 F -0.228 7.228 12 C -0.161 4.161 13 H 0.103 0.897 14 C -0.157 4.157 15 C -0.181 4.181 16 C -0.075 4.075 17 N -0.309 5.309 18 C -0.047 4.047 19 H 0.080 0.920 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.104 0.896 23 H 0.090 0.910 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.166 0.834 27 H 0.095 0.905 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.113 -8.469 -1.158 11.121 hybrid contribution -0.818 1.034 1.089 1.710 sum 6.295 -7.435 -0.068 9.742 Atomic orbital electron populations 1.70178 1.08285 1.28904 1.46294 1.26210 0.95767 1.04444 0.91606 0.85245 0.78167 0.76320 0.79780 1.18270 1.20638 1.18468 1.22003 0.94771 0.90229 1.57518 0.89051 1.18932 0.80589 0.96555 0.69236 1.92789 1.78067 1.97606 1.53837 1.92792 1.78260 1.97612 1.54115 1.22614 0.97823 0.93763 1.01854 0.89750 1.21606 0.98447 0.94441 1.01231 1.22192 0.98414 0.97720 0.99809 1.22145 0.97467 0.91829 0.96071 1.60760 1.16702 1.01770 1.51676 1.21707 0.94143 0.94758 0.94063 0.91996 0.93222 0.92876 0.89577 0.91008 0.87937 0.91735 0.83412 0.90534 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.97 12.62 21.45 0.27 -54.70 15 2 C 0.02 1.36 5.38 84.65 0.46 1.82 15 3 Si 0.98 42.86 29.54 68.60 2.03 44.89 15 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 7 C -0.61 -33.62 7.91 25.60 0.20 -33.42 15 8 H 0.09 4.65 7.06 -2.91 -0.02 4.63 15 9 C 0.38 20.50 1.12 29.85 0.03 20.53 15 10 F -0.24 -13.98 15.52 44.97 0.70 -13.29 15 11 F -0.25 -14.41 15.95 44.97 0.72 -13.70 15 12 C -0.14 -5.71 1.97 -10.74 -0.02 -5.73 15 13 H 0.08 3.34 8.14 -2.38 -0.02 3.32 15 14 C -0.12 -4.27 5.02 30.68 0.15 -4.12 15 15 C -0.14 -3.60 6.08 30.65 0.19 -3.41 15 16 C 0.05 1.32 6.55 86.33 0.57 1.88 15 17 N -0.68 -19.43 6.87 -514.01 -3.53 -22.95 15 18 C 0.08 3.09 5.48 86.32 0.47 3.57 15 19 H 0.27 15.43 8.31 -92.70 -0.77 14.66 15 20 H 0.05 1.90 7.88 -2.39 -0.02 1.88 15 21 H 0.05 1.99 7.78 -2.39 -0.02 1.97 15 22 H 0.09 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 15 25 H 0.06 1.67 8.14 -2.38 -0.02 1.65 15 26 H 0.35 8.68 8.86 -89.70 -0.79 7.89 15 27 H 0.08 2.99 6.98 -2.39 -0.02 2.97 15 28 H 0.06 2.33 7.66 -2.39 -0.02 2.32 15 Total: -1.00 -66.00 236.56 2.60 -63.41 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.37 Total: 15.23 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 2.05 Total: -18.89 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -3.26 Total: -77.66 kcal Atomic # 9 Polarization: -28.40 SS G_CDS: 1.42 Total: -26.98 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -66.00 2.60 -63.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256894.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.174 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds