Wall clock time and date at job start Mon Mar 30 2020 02:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48714 * 111.01573 * 2 1 4 4 C 1.54380 * 104.51697 * 201.03906 * 3 2 1 5 5 H 1.09010 * 110.31901 * 264.78260 * 4 3 2 6 6 C 1.52996 * 110.32691 * 142.68028 * 4 3 2 7 7 C 1.50702 * 109.47159 * 67.82255 * 6 4 3 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 4 9 9 C 1.37884 * 119.99942 * 179.72211 * 7 6 4 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 6 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 6 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.54261 * 105.15186 * 23.72846 * 4 3 2 16 16 F 1.39902 * 110.31968 * 118.94968 * 15 4 3 17 17 F 1.39899 * 110.32233 * 241.05488 * 15 4 3 18 18 C 1.48564 * 110.99666 * 244.49123 * 2 1 3 19 19 H 1.09004 * 109.46800 * 175.63463 * 1 2 3 20 20 H 1.08999 * 109.46792 * 295.62964 * 1 2 3 21 21 H 1.09001 * 109.47358 * 55.63557 * 1 2 3 22 22 H 1.08996 * 110.51354 * 82.25228 * 3 2 1 23 23 H 1.09000 * 110.39074 * 319.75964 * 3 2 1 24 24 H 1.09004 * 109.47066 * 307.82458 * 6 4 3 25 25 H 1.08994 * 109.47405 * 187.82288 * 6 4 3 26 26 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 27 27 H 1.09000 * 110.41259 * 40.25987 * 18 2 1 28 28 H 1.09000 * 110.51201 * 277.86646 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0024 1.3882 0.0000 4 6 3.4432 1.2492 -0.5365 5 1 4.1497 1.1759 0.2904 6 6 3.7947 2.4401 -1.4304 7 6 3.8753 3.6904 -0.5928 8 1 3.6944 3.6405 0.4708 9 6 4.1862 4.8969 -1.1833 10 7 4.2619 5.9870 -0.4515 11 14 4.4997 4.9832 -3.0228 12 1 3.2217 5.2487 -3.7308 13 1 5.4615 6.0776 -3.3102 14 1 5.0653 3.6919 -3.4896 15 6 3.4432 -0.0561 -1.3586 16 9 3.7646 0.2106 -2.6938 17 9 4.3499 -0.9725 -0.8151 18 6 2.0014 -0.5973 -1.2518 19 1 -0.3633 -1.0247 -0.0782 20 1 -0.3633 0.4445 0.9266 21 1 -0.3634 0.5801 -0.8483 22 1 2.0109 1.7941 1.0115 23 1 1.4105 2.0224 -0.6600 24 1 3.0248 2.5623 -2.1923 25 1 4.7566 2.2623 -1.9111 26 1 4.4803 6.8359 -0.8670 27 1 1.4098 -0.2746 -2.1085 28 1 2.0078 -1.6851 -1.1833 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261293485.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:05 Heat of formation + Delta-G solvation = -100.527947 kcal Electronic energy + Delta-G solvation = -13997.787219 eV Core-core repulsion = 11298.245891 eV Total energy + Delta-G solvation = -2699.541328 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.46311 -46.56254 -38.29457 -33.76278 -31.79581 -29.21752 -27.19994 -25.13626 -22.26696 -21.33293 -19.69273 -17.47162 -16.76932 -16.21999 -15.52709 -14.74396 -14.40232 -14.36037 -13.98771 -13.38460 -12.97744 -12.88706 -12.66790 -12.33367 -11.96985 -11.75131 -11.37838 -11.28717 -10.95631 -10.54042 -10.21071 -9.93245 -9.66708 -9.25444 -8.60405 -8.47194 -6.10824 -4.10447 3.27825 3.36130 3.42608 3.86077 4.14257 4.40886 4.45391 4.69120 4.97202 5.23139 5.31375 5.47329 5.49317 5.52947 5.78391 5.86842 5.96957 6.28028 6.30961 6.46438 6.85333 6.98148 7.11798 7.20976 7.66823 8.43285 8.92031 9.50793 11.01861 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.037502 B = 0.011470 C = 0.010067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.445253 B = 2440.495697 C = 2780.677399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.516 5.516 3 C 0.049 3.951 4 C -0.111 4.111 5 H 0.101 0.899 6 C -0.003 4.003 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.071 3.929 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.263 1.263 15 C 0.276 3.724 16 F -0.194 7.194 17 F -0.197 7.197 18 C -0.001 4.001 19 H 0.067 0.933 20 H 0.075 0.925 21 H 0.032 0.968 22 H 0.094 0.906 23 H 0.061 0.939 24 H 0.018 0.982 25 H 0.027 0.973 26 H 0.264 0.736 27 H 0.071 0.929 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 -11.376 -1.910 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.240 5.240 3 C -0.078 4.078 4 C -0.130 4.130 5 H 0.119 0.881 6 C -0.041 4.041 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.131 4.131 10 N -0.538 5.538 11 Si 0.701 3.299 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.187 1.187 15 C 0.239 3.761 16 F -0.175 7.175 17 F -0.178 7.178 18 C -0.130 4.130 19 H 0.085 0.915 20 H 0.093 0.907 21 H 0.050 0.950 22 H 0.113 0.887 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.759 -11.495 -1.455 12.939 hybrid contribution 0.013 0.565 -1.766 1.854 sum -5.746 -10.930 -3.221 12.762 Atomic orbital electron populations 1.22513 0.87466 1.01718 1.01678 1.65462 1.08695 1.17443 1.32424 1.23212 0.93921 0.87794 1.02825 1.22907 0.98533 0.92293 0.99301 0.88086 1.19617 0.97080 0.92513 0.94868 1.21001 1.48440 0.90319 0.96226 0.90616 1.24973 0.94529 0.95622 0.97974 1.69899 1.48815 0.99207 1.35836 0.86850 0.78586 0.78276 0.86164 1.20239 1.21202 1.18703 1.21923 0.87018 0.89995 0.77169 1.92980 1.93988 1.94346 1.36224 1.92974 1.70203 1.68986 1.85639 1.23964 0.93147 1.01734 0.94160 0.91456 0.90671 0.94969 0.88734 0.92090 0.96383 0.95468 0.92600 0.91067 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.53 60.07 0.57 0.75 15 2 N -0.52 -7.89 5.66 -238.09 -1.35 -9.23 15 3 C 0.05 0.88 5.62 -2.10 -0.01 0.87 15 4 C -0.11 -2.22 2.86 -89.24 -0.26 -2.48 15 5 H 0.10 2.08 8.04 -51.92 -0.42 1.66 15 6 C 0.00 -0.07 2.55 -27.88 -0.07 -0.15 15 7 C -0.52 -14.41 9.25 -34.44 -0.32 -14.73 15 8 H 0.08 2.21 7.97 -52.49 -0.42 1.79 15 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 10 N -0.90 -27.22 13.96 55.43 0.77 -26.45 15 11 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 15 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 14 H -0.26 -6.38 6.54 56.52 0.37 -6.01 15 15 C 0.28 5.02 2.66 -25.35 -0.07 4.95 15 16 F -0.19 -3.79 15.57 2.25 0.04 -3.76 15 17 F -0.20 -3.65 17.09 2.25 0.04 -3.61 15 18 C 0.00 -0.01 6.09 -2.18 -0.01 -0.03 15 19 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.03 0.38 7.98 -51.93 -0.41 -0.04 15 22 H 0.09 1.68 8.14 -51.93 -0.42 1.26 15 23 H 0.06 1.12 7.54 -51.93 -0.39 0.73 15 24 H 0.02 0.42 7.40 -51.93 -0.38 0.04 15 25 H 0.03 0.67 6.89 -51.93 -0.36 0.32 15 26 H 0.26 7.50 8.31 -40.82 -0.34 7.17 15 27 H 0.07 0.99 7.95 -51.93 -0.41 0.57 15 28 H 0.10 1.29 8.12 -51.93 -0.42 0.87 15 LS Contribution 239.15 15.07 3.60 3.60 Total: -1.00 -29.75 239.15 -5.48 -35.23 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: -3.65 Total: -3.86 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.26 Total: -8.88 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.57 Total: -35.68 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.07 Total: -7.37 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.75 -5.48 -35.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261293485.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.302 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds