Wall clock time and date at job start Mon Mar 30 2020 02:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48495 * 109.47017 * 239.99709 * 3 2 1 5 5 H 1.48494 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46844 * 120.00030 * 3 2 1 7 7 C 1.37881 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99568 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46549 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.52716 * 305.12622 * 10 9 7 12 12 C 1.53123 * 109.52388 * 65.32094 * 10 9 7 13 13 C 1.53030 * 109.28009 * 177.55772 * 12 10 9 14 14 N 1.46846 * 109.52377 * 300.82027 * 13 12 10 15 15 C 1.46846 * 111.19997 * 61.74000 * 14 13 12 16 16 C 1.53036 * 109.52162 * 298.26076 * 15 14 13 17 17 F 1.39898 * 109.50157 * 179.11911 * 16 15 14 18 18 F 1.39897 * 109.50280 * 299.23598 * 16 15 14 19 19 H 0.96999 * 119.99832 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47385 * 60.00426 * 9 7 2 21 21 H 1.09001 * 109.47246 * 299.99560 * 9 7 2 22 22 H 1.09003 * 109.49962 * 297.49676 * 12 10 9 23 23 H 1.08997 * 109.50390 * 57.57519 * 12 10 9 24 24 H 1.08999 * 109.46586 * 180.80053 * 13 12 10 25 25 H 1.08998 * 109.46592 * 60.83401 * 13 12 10 26 26 H 1.00904 * 110.99845 * 297.64136 * 14 13 12 27 27 H 1.08998 * 109.45759 * 58.27846 * 15 14 13 28 28 H 1.09003 * 109.46299 * 178.25316 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 1 2.9307 -3.5544 -0.8425 12 6 3.0369 -3.6599 1.3089 13 6 3.9862 -4.8601 1.3278 14 7 3.2108 -6.1011 1.2055 15 6 2.4793 -6.1469 -0.0670 16 6 1.4851 -4.9851 -0.1276 17 9 0.8027 -5.0175 -1.3484 18 9 0.5690 -5.0992 0.9236 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 3.6141 -2.7383 1.3840 23 1 2.3475 -3.7272 2.1505 24 1 4.5411 -4.8695 2.2660 25 1 4.6842 -4.7843 0.4941 26 1 2.5832 -6.2140 1.9875 27 1 3.1844 -6.0651 -0.8942 28 1 1.9396 -7.0910 -0.1419 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261296853.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:45 Heat of formation + Delta-G solvation = -121.056760 kcal Electronic energy + Delta-G solvation = -14109.803476 eV Core-core repulsion = 11409.371952 eV Total energy + Delta-G solvation = -2700.431524 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.39574 -46.38405 -37.92116 -33.88174 -31.74253 -29.85333 -27.23052 -24.15388 -22.51182 -21.37015 -19.80327 -16.97464 -16.55019 -16.31347 -15.68310 -15.15203 -14.59908 -14.21060 -13.36045 -13.16246 -12.77543 -12.60002 -12.42886 -12.07666 -12.03735 -11.52354 -11.26540 -11.05823 -10.74929 -10.64504 -10.28136 -9.99332 -9.60201 -9.15530 -8.40805 -8.27115 -6.04448 -4.08369 3.29562 3.34643 3.36039 4.15905 4.28849 4.39987 4.75376 4.86152 5.02495 5.30129 5.41054 5.54192 5.56135 5.70730 5.85187 6.10435 6.18261 6.46707 6.69840 6.80141 6.97996 7.32077 7.57444 7.67025 7.91777 8.30499 8.96542 9.55343 11.06790 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.046242 B = 0.010410 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.361507 B = 2688.970722 C = 3031.321891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.118 4.118 11 H 0.085 0.915 12 C -0.140 4.140 13 C 0.046 3.954 14 N -0.676 5.676 15 C 0.026 3.974 16 C 0.249 3.751 17 F -0.203 7.203 18 F -0.203 7.203 19 H 0.262 0.738 20 H 0.023 0.977 21 H 0.023 0.977 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.346 0.654 27 H 0.099 0.901 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -9.665 1.555 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.137 4.137 11 H 0.103 0.897 12 C -0.179 4.179 13 C -0.083 4.083 14 N -0.304 5.304 15 C -0.106 4.106 16 C 0.211 3.789 17 F -0.184 7.184 18 F -0.184 7.184 19 H 0.072 0.928 20 H 0.041 0.959 21 H 0.042 0.958 22 H 0.108 0.892 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.164 0.836 27 H 0.118 0.882 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.294 -9.931 1.326 11.832 hybrid contribution -0.587 1.668 0.077 1.770 sum 5.708 -8.263 1.403 10.140 Atomic orbital electron populations 1.69967 1.06104 1.26853 1.50129 1.25028 0.94841 0.99298 0.95196 0.86633 0.79555 0.83067 0.78603 1.20198 1.21239 1.20206 1.21062 0.92803 0.90554 1.51448 0.92496 1.19123 0.93268 0.90482 0.98167 1.22278 0.99091 0.93147 0.99212 0.89660 1.22227 0.98673 0.99799 0.97241 1.22255 0.96157 0.87316 1.02604 1.60748 1.28910 1.36986 1.03750 1.22993 0.95600 0.96738 0.95241 1.22365 0.84232 1.00705 0.71572 1.92958 1.82377 1.97646 1.45386 1.92936 1.70016 1.97237 1.58224 0.92813 0.95867 0.95836 0.89233 0.91629 0.90352 0.90691 0.83565 0.88229 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.27 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 7 C -0.52 -14.40 8.45 -34.44 -0.29 -14.70 15 8 H 0.06 1.49 7.08 -52.49 -0.37 1.12 15 9 C 0.03 0.69 4.19 -27.88 -0.12 0.58 15 10 C -0.12 -2.39 1.84 -90.49 -0.17 -2.56 15 11 H 0.09 1.69 8.14 -51.93 -0.42 1.27 15 12 C -0.14 -2.45 5.00 -26.65 -0.13 -2.58 15 13 C 0.05 0.62 6.55 -3.84 -0.03 0.60 15 14 N -0.68 -9.08 6.86 -113.82 -0.78 -9.86 15 15 C 0.03 0.37 6.07 -3.84 -0.02 0.34 15 16 C 0.25 4.61 1.67 -26.65 -0.04 4.56 15 17 F -0.20 -4.10 16.57 2.25 0.04 -4.07 15 18 F -0.20 -4.04 15.78 2.25 0.04 -4.00 15 19 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 20 H 0.02 0.66 7.74 -51.93 -0.40 0.26 15 21 H 0.02 0.66 7.90 -51.93 -0.41 0.25 15 22 H 0.09 1.64 7.05 -51.93 -0.37 1.28 15 23 H 0.06 1.20 7.91 -51.93 -0.41 0.79 15 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.35 4.52 8.51 -39.29 -0.33 4.18 15 27 H 0.10 1.30 8.14 -51.93 -0.42 0.88 15 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 LS Contribution 237.81 15.07 3.58 3.58 Total: -1.00 -30.18 237.81 -5.85 -36.03 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.54 Total: 0.36 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -0.90 Total: -12.19 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.04 Total: -36.13 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.07 Total: -8.07 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.18 -5.85 -36.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296853.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.026 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds