Wall clock time and date at job start Mon Mar 30 2020 02:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48495 * 109.47017 * 239.99709 * 3 2 1 5 5 H 1.48494 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46844 * 120.00030 * 3 2 1 7 7 C 1.37881 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99568 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46549 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.52716 * 305.12622 * 10 9 7 12 12 C 1.53123 * 109.52388 * 65.32094 * 10 9 7 13 13 C 1.53030 * 109.28009 * 177.55772 * 12 10 9 14 14 N 1.46846 * 109.52377 * 300.82027 * 13 12 10 15 15 C 1.46846 * 111.19997 * 61.74000 * 14 13 12 16 16 C 1.53036 * 109.52162 * 298.26076 * 15 14 13 17 17 F 1.39898 * 109.50157 * 179.11911 * 16 15 14 18 18 F 1.39897 * 109.50280 * 299.23598 * 16 15 14 19 19 H 0.96999 * 119.99832 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47385 * 60.00426 * 9 7 2 21 21 H 1.09001 * 109.47246 * 299.99560 * 9 7 2 22 22 H 1.09003 * 109.49962 * 297.49676 * 12 10 9 23 23 H 1.08997 * 109.50390 * 57.57519 * 12 10 9 24 24 H 1.08999 * 109.46586 * 180.80053 * 13 12 10 25 25 H 1.08998 * 109.46592 * 60.83401 * 13 12 10 26 26 H 1.00904 * 110.99845 * 297.64136 * 14 13 12 27 27 H 1.08998 * 109.45759 * 58.27846 * 15 14 13 28 28 H 1.09003 * 109.46299 * 178.25316 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 1 2.9307 -3.5544 -0.8425 12 6 3.0369 -3.6599 1.3089 13 6 3.9862 -4.8601 1.3278 14 7 3.2108 -6.1011 1.2055 15 6 2.4793 -6.1469 -0.0670 16 6 1.4851 -4.9851 -0.1276 17 9 0.8027 -5.0175 -1.3484 18 9 0.5690 -5.0992 0.9236 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6248 -2.5571 0.8897 22 1 3.6141 -2.7383 1.3840 23 1 2.3475 -3.7272 2.1505 24 1 4.5411 -4.8695 2.2660 25 1 4.6842 -4.7843 0.4941 26 1 2.5832 -6.2140 1.9875 27 1 3.1844 -6.0651 -0.8942 28 1 1.9396 -7.0910 -0.1419 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261296853.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:44 Heat of formation + Delta-G solvation = -142.076723 kcal Electronic energy + Delta-G solvation = -14110.714970 eV Core-core repulsion = 11409.371952 eV Total energy + Delta-G solvation = -2701.343018 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.94033 -47.94947 -39.24834 -35.75051 -33.60908 -31.13617 -29.09146 -25.90886 -23.88494 -22.94857 -21.33195 -18.80475 -18.25111 -17.75008 -17.22899 -16.67565 -16.37747 -15.64740 -14.82832 -14.67264 -14.41738 -14.31771 -14.17783 -13.56820 -13.43982 -13.27402 -12.87383 -12.63469 -12.47283 -12.36303 -11.87196 -11.64907 -11.47981 -11.13652 -10.60724 -9.53425 -8.23654 -6.36310 1.38583 1.42155 1.49965 2.37316 2.82884 3.09635 3.10650 3.29876 3.47219 3.62912 4.09039 4.26367 4.29168 4.42215 4.64231 4.76887 4.81403 4.99614 5.10164 5.27299 5.36493 5.54304 5.72629 5.82336 6.12363 6.24390 6.78767 7.33260 8.88767 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.046242 B = 0.010410 C = 0.009235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.361507 B = 2688.970722 C = 3031.321891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.033 3.967 10 C -0.117 4.117 11 H 0.092 0.908 12 C -0.134 4.134 13 C 0.056 3.944 14 N -0.665 5.665 15 C 0.038 3.962 16 C 0.240 3.760 17 F -0.217 7.217 18 F -0.215 7.215 19 H 0.263 0.737 20 H -0.018 1.018 21 H -0.013 1.013 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.350 0.650 27 H 0.118 0.882 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.333 -10.234 1.808 13.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.090 0.910 9 C -0.004 4.004 10 C -0.136 4.136 11 H 0.111 0.889 12 C -0.173 4.173 13 C -0.073 4.073 14 N -0.293 5.293 15 C -0.093 4.093 16 C 0.202 3.798 17 F -0.198 7.198 18 F -0.197 7.197 19 H 0.072 0.928 20 H 0.000 1.000 21 H 0.006 0.994 22 H 0.098 0.902 23 H 0.069 0.931 24 H 0.122 0.878 25 H 0.108 0.892 26 H 0.168 0.832 27 H 0.136 0.864 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.703 -10.523 1.587 13.747 hybrid contribution -1.394 1.843 -0.003 2.311 sum 7.309 -8.680 1.584 11.457 Atomic orbital electron populations 1.70135 1.08187 1.27932 1.51505 1.26083 0.95712 1.03770 0.94643 0.85421 0.78141 0.77598 0.79429 1.18919 1.21248 1.18668 1.21510 0.93660 0.91240 1.50657 0.90982 1.18927 0.93758 0.93298 0.94434 1.22184 0.98147 0.91934 1.01299 0.88929 1.22181 0.98697 1.01653 0.94765 1.22259 0.95236 0.85099 1.04698 1.60806 1.28578 1.36272 1.03610 1.23062 0.94727 0.95265 0.96255 1.22844 0.84482 1.01822 0.70666 1.92927 1.82869 1.97743 1.46291 1.92909 1.70705 1.97297 1.58766 0.92796 0.99957 0.99419 0.90217 0.93140 0.87762 0.89233 0.83158 0.86401 0.87084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.54 13.29 21.45 0.28 -58.26 15 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 15 3 Si 0.97 43.97 29.54 68.60 2.03 45.99 15 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 15 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 15 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 15 7 C -0.53 -29.90 8.45 25.60 0.22 -29.68 15 8 H 0.07 3.73 7.08 -2.91 -0.02 3.71 15 9 C 0.03 1.79 4.19 29.85 0.13 1.92 15 10 C -0.12 -4.71 1.84 -10.71 -0.02 -4.73 15 11 H 0.09 3.59 8.14 -2.39 -0.02 3.57 15 12 C -0.13 -4.51 5.00 30.65 0.15 -4.36 15 13 C 0.06 1.34 6.55 86.32 0.57 1.90 15 14 N -0.66 -15.57 6.86 -514.03 -3.53 -19.10 15 15 C 0.04 0.98 6.07 86.33 0.52 1.50 15 16 C 0.24 8.74 1.67 30.65 0.05 8.79 15 17 F -0.22 -8.86 16.57 44.97 0.75 -8.12 15 18 F -0.22 -8.66 15.78 44.97 0.71 -7.95 15 19 H 0.26 15.47 8.31 -92.71 -0.77 14.70 15 20 H -0.02 -1.10 7.74 -2.39 -0.02 -1.12 15 21 H -0.01 -0.76 7.90 -2.39 -0.02 -0.78 15 22 H 0.08 2.83 7.05 -2.39 -0.02 2.81 15 23 H 0.05 1.83 7.91 -2.39 -0.02 1.81 15 24 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.35 8.10 8.51 -89.69 -0.76 7.34 15 27 H 0.12 2.63 8.14 -2.39 -0.02 2.61 15 28 H 0.11 2.43 8.14 -2.39 -0.02 2.41 15 Total: -1.00 -66.99 237.81 2.71 -64.28 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.40 Total: 7.60 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 2.08 Total: -24.45 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -3.24 Total: -77.36 kcal Atomic # 9 Polarization: -17.52 SS G_CDS: 1.45 Total: -16.07 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.99 2.71 -64.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296853.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.796 kcal (2) G-P(sol) polarization free energy of solvation -66.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds