Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99732 * 2 1 4 4 H 1.48504 * 109.47422 * 264.38561 * 3 2 1 5 5 H 1.48499 * 109.47348 * 24.39203 * 3 2 1 6 6 H 1.48503 * 109.47168 * 144.38608 * 3 2 1 7 7 C 1.37878 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99608 * 20.54758 * 7 2 1 9 9 C 1.50698 * 120.00020 * 200.26150 * 7 2 1 10 10 C 1.53005 * 109.50476 * 294.88117 * 9 7 2 11 11 F 1.39895 * 109.46605 * 179.97438 * 10 9 7 12 12 F 1.39898 * 109.46827 * 299.99593 * 10 9 7 13 13 C 1.53114 * 109.50374 * 174.80004 * 9 7 2 14 14 C 1.53121 * 109.16034 * 297.71545 * 13 9 7 15 15 C 1.53040 * 109.27854 * 302.34841 * 14 13 9 16 16 N 1.46847 * 109.52551 * 59.17665 * 15 14 13 17 17 C 1.46845 * 111.19870 * 298.25763 * 16 15 14 18 18 H 0.97002 * 120.00394 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.46892 * 59.99740 * 10 9 7 20 20 H 1.09002 * 109.52342 * 57.61732 * 13 9 7 21 21 H 1.09005 * 109.52488 * 177.81380 * 13 9 7 22 22 H 1.09004 * 109.50695 * 62.28414 * 14 13 9 23 23 H 1.08999 * 109.50660 * 182.36969 * 14 13 9 24 24 H 1.09003 * 109.46297 * 179.19645 * 15 14 13 25 25 H 1.09004 * 109.45981 * 299.15971 * 15 14 13 26 26 H 1.00896 * 110.99688 * 62.35903 * 16 15 14 27 27 H 1.09001 * 109.46227 * 301.73149 * 17 16 15 28 28 H 1.08994 * 109.46367 * 181.75735 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6152 1.9781 -1.3934 5 1 1.3923 2.6840 0.5782 6 1 3.4823 1.4774 0.8153 7 6 2.0045 -1.1940 -0.0005 8 1 1.5160 -2.0994 -0.3292 9 6 3.4416 -1.2346 0.4514 10 6 4.3048 -0.4239 -0.5174 11 9 5.6385 -0.4616 -0.0968 12 9 4.2045 -0.9710 -1.8010 13 6 3.9283 -2.6861 0.4779 14 6 3.0978 -3.4762 1.4930 15 6 3.2183 -2.8154 2.8681 16 7 2.7398 -1.4293 2.7902 17 6 3.5522 -0.6388 1.8568 18 1 -0.4851 0.8400 0.0004 19 1 3.9587 0.6095 -0.5347 20 1 3.8107 -3.1279 -0.5116 21 1 4.9789 -2.7128 0.7673 22 1 2.0529 -3.4822 1.1825 23 1 3.4672 -4.5003 1.5471 24 1 2.6167 -3.3674 3.5903 25 1 4.2615 -2.8223 3.1841 26 1 1.7637 -1.3976 2.5366 27 1 4.5938 -0.6559 2.1775 28 1 3.1929 0.3902 1.8443 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261334706.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = -96.994188 kcal Electronic energy + Delta-G solvation = -14742.564083 eV Core-core repulsion = 12043.175990 eV Total energy + Delta-G solvation = -2699.388092 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.04760 -45.96794 -38.26765 -33.13151 -31.34039 -30.60628 -25.40266 -24.75664 -22.93628 -21.23872 -19.07284 -17.00103 -16.68644 -16.13244 -15.37848 -15.04430 -14.32593 -14.03188 -13.26868 -12.99379 -12.73672 -12.44064 -12.34956 -12.25515 -11.79057 -11.29683 -11.18516 -10.66024 -10.41654 -10.33169 -10.12286 -10.09465 -9.49889 -8.75739 -8.57887 -7.50605 -6.42002 -4.36270 2.98167 3.05551 3.18433 4.09675 4.65301 4.92098 5.26231 5.27730 5.51048 5.74032 5.75499 5.83638 6.01464 6.20385 6.28414 6.34666 6.39467 6.53559 6.64228 6.88091 6.98854 7.02161 7.45264 7.85143 8.23754 8.31265 8.70017 9.22010 10.69875 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.021664 C = 0.016307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.295776 B = 1292.144018 C = 1716.682286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.089 3.911 3 Si 0.835 3.165 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.516 4.516 8 H 0.084 0.916 9 C -0.026 4.026 10 C 0.243 3.757 11 F -0.226 7.226 12 F -0.205 7.205 13 C -0.094 4.094 14 C -0.145 4.145 15 C 0.061 3.939 16 N -0.676 5.676 17 C 0.059 3.941 18 H 0.270 0.730 19 H 0.081 0.919 20 H 0.058 0.942 21 H 0.045 0.955 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.357 0.643 27 H 0.052 0.948 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.933 -1.519 2.637 6.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.117 4.117 3 Si 0.665 3.335 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.553 4.553 8 H 0.102 0.898 9 C -0.030 4.030 10 C 0.189 3.811 11 F -0.208 7.208 12 F -0.187 7.187 13 C -0.132 4.132 14 C -0.184 4.184 15 C -0.070 4.070 16 N -0.305 5.305 17 C -0.071 4.071 18 H 0.080 0.920 19 H 0.098 0.902 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.094 0.906 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.177 0.823 27 H 0.071 0.929 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.085 -1.218 3.199 6.982 hybrid contribution 0.212 0.658 -1.290 1.463 sum 6.297 -0.560 1.910 6.604 Atomic orbital electron populations 1.69947 1.06176 1.27580 1.46326 1.24951 0.94491 0.98510 0.93717 0.88092 0.81092 0.85319 0.79044 1.20029 1.20766 1.16845 1.20601 0.91960 0.96653 1.46061 0.89759 1.20246 0.96147 0.93364 0.93214 1.23256 0.77776 0.99323 0.80699 1.92844 1.39774 1.97831 1.90320 1.92867 1.95986 1.88282 1.41531 1.21339 0.97409 0.95294 0.99151 1.22128 1.01838 0.97681 0.96716 1.21901 0.99797 0.89807 0.95464 1.60891 1.08925 1.10225 1.50503 1.22427 0.96657 0.97695 0.90349 0.92000 0.90182 0.92292 0.93646 0.90604 0.93379 0.91886 0.92389 0.82317 0.92946 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.04 13.96 55.43 0.77 -23.26 15 2 C 0.09 2.33 5.26 -17.82 -0.09 2.24 15 3 Si 0.83 19.30 23.11 -169.99 -3.93 15.37 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.24 -5.19 4.47 56.52 0.25 -4.93 15 7 C -0.52 -13.16 6.51 -34.44 -0.22 -13.38 15 8 H 0.08 2.36 7.32 -52.49 -0.38 1.98 15 9 C -0.03 -0.59 0.21 -155.58 -0.03 -0.63 15 10 C 0.24 5.51 3.64 37.16 0.14 5.64 15 11 F -0.23 -4.84 16.25 2.25 0.04 -4.80 15 12 F -0.21 -4.83 16.58 2.25 0.04 -4.80 15 13 C -0.09 -1.92 4.49 -26.61 -0.12 -2.04 15 14 C -0.14 -2.65 5.82 -26.65 -0.16 -2.81 15 15 C 0.06 1.06 6.55 -3.83 -0.03 1.04 15 16 N -0.68 -13.62 6.82 -113.81 -0.78 -14.39 15 17 C 0.06 1.26 4.69 -3.83 -0.02 1.24 15 18 H 0.27 7.08 8.31 -40.82 -0.34 6.74 15 19 H 0.08 1.84 2.66 -51.93 -0.14 1.70 15 20 H 0.06 1.24 7.88 -51.93 -0.41 0.83 15 21 H 0.04 0.88 7.74 -51.93 -0.40 0.48 15 22 H 0.08 1.54 6.94 -51.93 -0.36 1.18 15 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.36 7.78 7.91 -39.29 -0.31 7.47 15 27 H 0.05 1.07 7.78 -51.93 -0.40 0.67 15 28 H 0.07 1.64 3.81 -51.93 -0.20 1.44 15 LS Contribution 217.34 15.07 3.28 3.28 Total: -1.00 -26.13 217.34 -4.27 -30.41 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.16 Total: 6.91 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -0.53 Total: -8.70 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.00 Total: -37.66 kcal Atomic # 9 Polarization: -9.68 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -3.93 Total: 15.37 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -26.13 -4.27 -30.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334706.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.588 kcal (2) G-P(sol) polarization free energy of solvation -26.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds