Wall clock time and date at job start Mon Mar 30 2020 02:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99732 * 2 1 4 4 H 1.48504 * 109.47422 * 264.38561 * 3 2 1 5 5 H 1.48499 * 109.47348 * 24.39203 * 3 2 1 6 6 H 1.48503 * 109.47168 * 144.38608 * 3 2 1 7 7 C 1.37878 * 120.00120 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99608 * 20.54758 * 7 2 1 9 9 C 1.50698 * 120.00020 * 200.26150 * 7 2 1 10 10 C 1.53005 * 109.50476 * 294.88117 * 9 7 2 11 11 F 1.39895 * 109.46605 * 179.97438 * 10 9 7 12 12 F 1.39898 * 109.46827 * 299.99593 * 10 9 7 13 13 C 1.53114 * 109.50374 * 174.80004 * 9 7 2 14 14 C 1.53121 * 109.16034 * 297.71545 * 13 9 7 15 15 C 1.53040 * 109.27854 * 302.34841 * 14 13 9 16 16 N 1.46847 * 109.52551 * 59.17665 * 15 14 13 17 17 C 1.46845 * 111.19870 * 298.25763 * 16 15 14 18 18 H 0.97002 * 120.00394 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.46892 * 59.99740 * 10 9 7 20 20 H 1.09002 * 109.52342 * 57.61732 * 13 9 7 21 21 H 1.09005 * 109.52488 * 177.81380 * 13 9 7 22 22 H 1.09004 * 109.50695 * 62.28414 * 14 13 9 23 23 H 1.08999 * 109.50660 * 182.36969 * 14 13 9 24 24 H 1.09003 * 109.46297 * 179.19645 * 15 14 13 25 25 H 1.09004 * 109.45981 * 299.15971 * 15 14 13 26 26 H 1.00896 * 110.99688 * 62.35903 * 16 15 14 27 27 H 1.09001 * 109.46227 * 301.73149 * 17 16 15 28 28 H 1.08994 * 109.46367 * 181.75735 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6152 1.9781 -1.3934 5 1 1.3923 2.6840 0.5782 6 1 3.4823 1.4774 0.8153 7 6 2.0045 -1.1940 -0.0005 8 1 1.5160 -2.0994 -0.3292 9 6 3.4416 -1.2346 0.4514 10 6 4.3048 -0.4239 -0.5174 11 9 5.6385 -0.4616 -0.0968 12 9 4.2045 -0.9710 -1.8010 13 6 3.9283 -2.6861 0.4779 14 6 3.0978 -3.4762 1.4930 15 6 3.2183 -2.8154 2.8681 16 7 2.7398 -1.4293 2.7902 17 6 3.5522 -0.6388 1.8568 18 1 -0.4851 0.8400 0.0004 19 1 3.9587 0.6095 -0.5347 20 1 3.8107 -3.1279 -0.5116 21 1 4.9789 -2.7128 0.7673 22 1 2.0529 -3.4822 1.1825 23 1 3.4672 -4.5003 1.5471 24 1 2.6167 -3.3674 3.5903 25 1 4.2615 -2.8223 3.1841 26 1 1.7637 -1.3976 2.5366 27 1 4.5938 -0.6559 2.1775 28 1 3.1929 0.3902 1.8443 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261334706.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:55 Heat of formation + Delta-G solvation = -115.464623 kcal Electronic energy + Delta-G solvation = -14743.365021 eV Core-core repulsion = 12043.175990 eV Total energy + Delta-G solvation = -2700.189031 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.84166 -47.77020 -39.91827 -34.99550 -33.12201 -32.22314 -27.15950 -26.65849 -24.56255 -22.82577 -20.83772 -18.82159 -18.51433 -17.93488 -17.11045 -16.77962 -16.11774 -15.67529 -15.01112 -14.78530 -14.45735 -14.20458 -14.10660 -13.93963 -13.47813 -12.97432 -12.89081 -12.35138 -12.18308 -12.09726 -11.80290 -11.74340 -11.31945 -10.56447 -10.47439 -9.11222 -8.44390 -6.41653 1.14735 1.20890 1.31297 2.16599 2.75264 3.06978 3.47894 3.64799 3.84256 3.97553 4.18521 4.24999 4.41951 4.62964 4.66123 4.77817 4.83561 4.99523 5.09577 5.25684 5.32386 5.40634 5.61317 6.19447 6.33473 6.57041 6.66134 7.18813 8.70758 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.021664 C = 0.016307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.295776 B = 1292.144018 C = 1716.682286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.048 3.952 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.211 1.211 7 C -0.509 4.509 8 H 0.046 0.954 9 C -0.030 4.030 10 C 0.242 3.758 11 F -0.215 7.215 12 F -0.213 7.213 13 C -0.095 4.095 14 C -0.139 4.139 15 C 0.060 3.940 16 N -0.677 5.677 17 C 0.061 3.939 18 H 0.271 0.729 19 H 0.083 0.917 20 H 0.044 0.956 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.344 0.656 27 H 0.069 0.931 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 -1.439 3.684 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.155 4.155 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.136 1.136 7 C -0.546 4.546 8 H 0.064 0.936 9 C -0.034 4.034 10 C 0.188 3.812 11 F -0.197 7.197 12 F -0.195 7.195 13 C -0.133 4.133 14 C -0.178 4.178 15 C -0.070 4.070 16 N -0.305 5.305 17 C -0.069 4.069 18 H 0.080 0.920 19 H 0.100 0.900 20 H 0.063 0.937 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.163 0.837 27 H 0.087 0.913 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.861 -1.150 4.257 9.013 hybrid contribution -0.341 0.533 -1.632 1.750 sum 7.519 -0.617 2.625 7.988 Atomic orbital electron populations 1.70049 1.07761 1.28377 1.48314 1.25536 0.94953 1.01425 0.93544 0.87374 0.81336 0.81587 0.79329 1.20267 1.20686 1.13645 1.20578 0.93523 0.95173 1.45361 0.93551 1.20287 0.94142 0.95069 0.93856 1.23214 0.78340 0.99311 0.80317 1.92862 1.38863 1.97800 1.90144 1.92855 1.96077 1.88403 1.42152 1.21357 0.98603 0.94114 0.99198 1.22067 0.99876 0.99252 0.96600 1.22041 1.01229 0.88367 0.95313 1.60908 1.08026 1.11863 1.49690 1.22390 0.97657 0.97357 0.89528 0.91970 0.90048 0.93715 0.91980 0.93383 0.90420 0.89756 0.90557 0.83749 0.91262 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.45 13.96 21.45 0.30 -51.15 15 2 C 0.05 2.51 5.26 84.66 0.45 2.96 15 3 Si 0.88 38.84 23.11 68.60 1.59 40.43 15 4 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.21 -8.33 4.47 99.48 0.44 -7.89 15 7 C -0.51 -26.15 6.51 25.60 0.17 -25.98 15 8 H 0.05 2.69 7.32 -2.91 -0.02 2.67 15 9 C -0.03 -1.31 0.21 -52.87 -0.01 -1.32 15 10 C 0.24 10.44 3.64 71.98 0.26 10.70 15 11 F -0.22 -8.52 16.25 44.97 0.73 -7.79 15 12 F -0.21 -9.79 16.58 44.97 0.75 -9.05 15 13 C -0.10 -3.70 4.49 30.67 0.14 -3.56 15 14 C -0.14 -4.82 5.82 30.65 0.18 -4.64 15 15 C 0.06 1.92 6.55 86.33 0.57 2.49 15 16 N -0.68 -25.81 6.82 -513.99 -3.51 -29.32 15 17 C 0.06 2.44 4.69 86.33 0.40 2.85 15 18 H 0.27 14.48 8.31 -92.71 -0.77 13.71 15 19 H 0.08 3.53 2.66 -2.39 -0.01 3.52 15 20 H 0.04 1.84 7.88 -2.39 -0.02 1.82 15 21 H 0.06 2.21 7.74 -2.38 -0.02 2.19 15 22 H 0.05 1.93 6.94 -2.38 -0.02 1.92 15 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.34 14.75 7.91 -89.70 -0.71 14.04 15 27 H 0.07 2.56 7.78 -2.39 -0.02 2.54 15 28 H 0.07 2.71 3.81 -2.39 -0.01 2.70 15 Total: -1.00 -54.90 217.34 2.22 -52.68 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.21 Total: 20.70 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 2.15 Total: -16.51 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.21 Total: -80.47 kcal Atomic # 9 Polarization: -18.32 SS G_CDS: 1.48 Total: -16.84 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 1.59 Total: 40.43 kcal Total: -54.90 2.22 -52.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261334706.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.782 kcal (2) G-P(sol) polarization free energy of solvation -54.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds