Wall clock time and date at job start Mon Mar 30 2020 02:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38062 * 119.95989 * 264.72635 * 3 2 1 5 5 C 1.39061 * 119.91167 * 179.77001 * 4 3 2 6 6 N 1.39303 * 120.08937 * 180.28299 * 5 4 3 7 7 C 1.36847 * 119.99753 * 180.22934 * 6 5 4 8 8 H 1.07999 * 120.00097 * 359.97438 * 7 6 5 9 9 C 1.38792 * 119.99845 * 179.97438 * 7 6 5 10 10 N 1.31597 * 120.00178 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00072 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46924 * 90.00283 * 11 9 7 13 13 H 1.48497 * 109.47367 * 210.00264 * 11 9 7 14 14 H 1.48500 * 109.47371 * 330.00407 * 11 9 7 15 15 C 1.39095 * 119.82125 * 0.50431 * 5 4 3 16 16 C 1.38032 * 119.91012 * 359.75020 * 15 5 4 17 17 C 1.38317 * 119.95192 * 85.00327 * 3 2 1 18 18 C 1.50704 * 119.90934 * 359.97438 * 17 3 2 19 19 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 20 20 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 21 21 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 23 23 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 24 24 H 1.08005 * 120.04216 * 0.02562 * 4 3 2 25 25 H 0.97002 * 119.99712 * 0.21817 * 6 5 4 26 26 H 0.96997 * 119.99984 * 179.97438 * 10 9 7 27 27 H 1.07999 * 120.05175 * 179.72516 * 15 5 4 28 28 H 1.08004 * 119.95674 * 179.97438 * 16 15 5 29 29 H 1.09002 * 109.46964 * 90.00107 * 18 17 3 30 30 H 1.08992 * 109.47047 * 209.99754 * 18 17 3 31 31 H 1.09000 * 109.47618 * 330.00283 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3659 2.0342 -1.1911 5 6 2.8248 3.3469 -1.1904 6 7 3.1567 3.9714 -2.3905 7 6 3.6126 5.2617 -2.3872 8 1 3.7146 5.7959 -1.4542 9 6 3.9438 5.8837 -3.5829 10 7 3.8200 5.2325 -4.7198 11 14 4.5654 7.6452 -3.5786 12 1 6.0453 7.6476 -3.4547 13 1 4.1737 8.3115 -4.8465 14 1 3.9715 8.3769 -2.4309 15 6 2.9559 4.0332 0.0124 16 6 2.6253 3.4110 1.1994 17 6 2.1642 2.1067 1.1939 18 6 1.8044 1.4313 2.4922 19 1 -0.3633 0.5137 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5139 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 2.2666 1.4966 -2.1225 25 1 3.0649 3.4915 -3.2285 26 1 4.0511 5.6673 -5.5554 27 1 3.3161 5.0513 0.0176 28 1 2.7272 3.9431 2.1337 29 1 2.6827 0.9269 2.8949 30 1 1.4552 2.1778 3.2054 31 1 1.0151 0.7007 2.3152 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300840638.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:59 Heat of formation + Delta-G solvation = -10.092390 kcal Electronic energy + Delta-G solvation = -12798.885842 eV Core-core repulsion = 10657.495624 eV Total energy + Delta-G solvation = -2141.390218 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.35924 -37.39899 -34.69960 -33.67237 -31.59865 -30.14918 -27.51869 -25.54346 -24.51037 -22.59058 -20.97233 -19.40643 -17.90196 -16.67696 -16.21242 -15.88565 -15.30600 -14.96532 -14.42502 -14.14620 -14.06522 -13.59133 -13.42558 -13.26520 -12.86263 -12.69594 -12.66975 -12.17698 -12.11609 -12.00953 -11.56883 -11.52571 -11.18432 -10.42275 -9.40178 -8.44249 -8.33575 -5.69225 0.82297 0.96890 1.39398 1.47390 1.52255 2.28877 2.91990 3.40744 3.50126 4.08074 4.19271 4.42455 4.49403 4.59784 4.68935 4.81157 4.89410 5.01929 5.04722 5.09529 5.15902 5.20857 5.34748 5.42951 5.49843 5.57497 5.80356 5.91243 6.00517 6.14318 6.54882 6.85532 7.56930 7.69633 8.75182 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.054265 B = 0.007626 C = 0.006845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.865328 B = 3670.722355 C = 4089.323149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.028 4.028 4 C -0.248 4.248 5 C 0.190 3.810 6 N -0.597 5.597 7 C -0.315 4.315 8 H 0.100 0.900 9 C -0.037 4.037 10 N -0.938 5.938 11 Si 0.997 3.003 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.262 1.262 15 C -0.246 4.246 16 C -0.063 4.063 17 C -0.203 4.203 18 C -0.091 4.091 19 H 0.059 0.941 20 H 0.039 0.961 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.388 0.612 26 H 0.272 0.728 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 -6.750 10.232 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 C -0.029 4.029 4 C -0.273 4.273 5 C 0.075 3.925 6 N -0.204 5.204 7 C -0.445 4.445 8 H 0.118 0.882 9 C -0.234 4.234 10 N -0.579 5.579 11 Si 0.821 3.179 12 H -0.199 1.199 13 H -0.206 1.206 14 H -0.186 1.186 15 C -0.270 4.270 16 C -0.082 4.082 17 C -0.206 4.206 18 C -0.147 4.147 19 H 0.078 0.922 20 H 0.058 0.942 21 H 0.095 0.905 22 H 0.106 0.894 23 H 0.083 0.917 24 H 0.120 0.880 25 H 0.221 0.779 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.147 0.853 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.882 -6.440 9.946 12.469 hybrid contribution 0.471 0.915 -1.121 1.522 sum -3.411 -5.525 8.825 10.956 Atomic orbital electron populations 1.21704 0.94029 1.02334 1.01683 1.20559 0.96760 0.91515 1.02945 1.19606 0.95513 0.96190 0.91551 1.20344 1.14124 0.94408 0.98381 1.18300 0.94759 0.92434 0.87054 1.40927 1.62023 1.12729 1.04734 1.19965 1.39829 0.89660 0.95013 0.88236 1.26135 0.98681 1.04369 0.94223 1.69803 1.50131 1.39563 0.98425 0.84839 0.78397 0.76707 0.77969 1.19882 1.20561 1.18599 1.20566 1.13736 1.00698 0.92046 1.20861 0.96214 0.94672 0.96447 1.19549 1.10264 0.95246 0.95576 1.20587 1.01251 1.00015 0.92858 0.92187 0.94187 0.90495 0.89447 0.91687 0.87987 0.77875 0.91882 0.88029 0.85330 0.91872 0.91851 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.70 71.98 0.70 -2.55 16 2 C -0.08 -2.14 5.37 29.85 0.16 -1.98 16 3 C -0.03 -0.98 5.13 -19.89 -0.10 -1.08 16 4 C -0.25 -10.57 9.53 22.43 0.21 -10.35 16 5 C 0.19 9.19 6.62 38.36 0.25 9.45 16 6 N -0.60 -32.23 5.43 -184.29 -1.00 -33.23 16 7 C -0.31 -17.48 9.56 84.04 0.80 -16.68 16 8 H 0.10 5.33 5.68 -2.91 -0.02 5.31 16 9 C -0.04 -2.01 5.50 84.86 0.47 -1.54 16 10 N -0.94 -53.90 13.05 21.65 0.28 -53.61 16 11 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 14 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 15 C -0.25 -11.09 9.30 22.43 0.21 -10.88 16 16 C -0.06 -2.35 9.69 22.25 0.22 -2.14 16 17 C -0.20 -6.85 5.88 -19.82 -0.12 -6.97 16 18 C -0.09 -2.20 9.21 71.24 0.66 -1.55 16 19 H 0.06 1.34 6.90 -2.39 -0.02 1.32 16 20 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.09 1.96 6.98 -2.39 -0.02 1.95 16 23 H 0.06 1.70 8.05 -2.39 -0.02 1.68 16 24 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16 25 H 0.39 21.55 7.90 -92.71 -0.73 20.82 16 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.10 4.70 5.96 -2.91 -0.02 4.69 16 28 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.38 8.08 -2.39 -0.02 1.36 16 31 H 0.07 1.53 5.41 -2.39 -0.01 1.51 16 Total: -1.00 -60.68 258.66 5.16 -55.52 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.39 Total: 32.58 kcal Atomic # 6 Polarization: -49.72 SS G_CDS: 3.46 Total: -46.27 kcal Atomic # 7 Polarization: -86.13 SS G_CDS: -0.72 Total: -86.84 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -60.68 5.16 -55.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300840638.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.427 kcal (2) G-P(sol) polarization free energy of solvation -60.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds