Wall clock time and date at job start Mon Mar 30 2020 02:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36938 * 119.99801 * 2 1 4 4 H 1.07998 * 120.00195 * 202.96391 * 3 2 1 5 5 C 1.38810 * 120.00165 * 22.96870 * 3 2 1 6 6 N 1.31619 * 119.99891 * 12.39306 * 5 3 2 7 7 Si 1.86800 * 120.00280 * 192.39672 * 5 3 2 8 8 H 1.48503 * 109.46923 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47306 * 119.99336 * 7 5 3 10 10 H 1.48501 * 109.47191 * 239.99942 * 7 5 3 11 11 C 1.46495 * 119.99926 * 180.02562 * 2 1 3 12 12 C 1.53781 * 113.69255 * 320.93392 * 11 2 1 13 13 C 1.53783 * 87.08142 * 139.99319 * 12 11 2 14 14 C 1.52998 * 113.61399 * 220.01896 * 13 12 11 15 15 F 1.39899 * 109.47091 * 42.49623 * 14 13 12 16 16 F 1.39897 * 109.46838 * 162.49957 * 14 13 12 17 17 C 1.53781 * 87.08263 * 334.57154 * 13 12 11 18 18 H 1.08993 * 109.47061 * 275.07690 * 1 2 3 19 19 H 1.09001 * 109.46899 * 35.07797 * 1 2 3 20 20 H 1.09003 * 109.46786 * 155.07455 * 1 2 3 21 21 H 0.97006 * 120.00184 * 180.02562 * 6 5 3 22 22 H 1.09008 * 112.84752 * 189.66849 * 11 2 1 23 23 H 1.09001 * 113.61397 * 254.54258 * 12 11 2 24 24 H 1.09003 * 113.61373 * 25.44202 * 12 11 2 25 25 H 1.09003 * 113.68597 * 89.12946 * 13 12 11 26 26 H 1.09005 * 109.47318 * 282.49854 * 14 13 12 27 27 H 1.09005 * 113.60713 * 270.88901 * 17 13 12 28 28 H 1.08988 * 113.61419 * 139.98287 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1655 1.2231 -0.3649 5 6 1.5382 2.3404 0.4691 6 7 0.4050 2.2613 1.1340 7 14 2.3234 4.0063 0.1567 8 1 3.5838 3.8241 -0.6071 9 1 1.3888 4.8553 -0.6250 10 1 2.6221 4.6639 1.4543 11 6 2.1975 -1.2687 -0.0006 12 6 1.5596 -2.3509 0.8864 13 6 1.9097 -3.3559 -0.2237 14 6 0.8169 -4.3969 -0.4749 15 9 -0.4347 -3.7721 -0.4596 16 9 1.0230 -4.9977 -1.7213 17 6 1.8675 -2.1701 -1.2020 18 1 -0.3633 0.0909 1.0236 19 1 -0.3633 0.8410 -0.5906 20 1 -0.3633 -0.9320 -0.4331 21 1 -0.0226 3.0681 1.4615 22 1 3.2667 -1.1402 0.1682 23 1 2.0976 -2.5247 1.8183 24 1 0.4877 -2.2188 1.0337 25 1 2.8999 -3.7989 -0.1170 26 1 0.8531 -5.1571 0.3054 27 1 0.8797 -1.9886 -1.6256 28 1 2.6540 -2.1980 -1.9560 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306158564.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:37 Heat of formation + Delta-G solvation = -82.675859 kcal Electronic energy + Delta-G solvation = -13840.918216 eV Core-core repulsion = 11142.151013 eV Total energy + Delta-G solvation = -2698.767203 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.80753 -47.82116 -39.95864 -36.15376 -32.68313 -28.91358 -28.04892 -26.50553 -25.24291 -22.28737 -19.97604 -18.91998 -18.19382 -18.00250 -17.73232 -16.53039 -16.10155 -15.36487 -14.87172 -14.58510 -14.53315 -14.22301 -13.66427 -13.25018 -13.12880 -12.86481 -12.62665 -12.48453 -12.33740 -12.22233 -12.00012 -11.63031 -11.34771 -10.94220 -10.60916 -8.75362 -7.82713 -5.32319 1.46062 1.47395 1.58089 2.50449 3.00600 3.27786 3.41032 3.44881 3.56141 3.93393 4.09191 4.26082 4.27677 4.36902 4.78818 4.83499 4.92787 4.96253 5.15054 5.24879 5.31499 5.58331 5.65664 5.69292 6.32690 7.14605 7.87524 8.33295 9.20239 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.072544 B = 0.008275 C = 0.007921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.881791 B = 3382.863055 C = 3534.233403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.605 5.605 3 C -0.268 4.268 4 H 0.074 0.926 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.971 3.029 8 H -0.265 1.265 9 H -0.293 1.293 10 H -0.290 1.290 11 C 0.147 3.853 12 C -0.144 4.144 13 C -0.147 4.147 14 C 0.265 3.735 15 F -0.223 7.223 16 F -0.218 7.218 17 C -0.154 4.154 18 H 0.005 0.995 19 H 0.009 0.991 20 H 0.026 0.974 21 H 0.248 0.752 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.071 0.929 25 H 0.146 0.854 26 H 0.151 0.849 27 H 0.060 0.940 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -12.887 -1.728 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.325 5.325 3 C -0.398 4.398 4 H 0.091 0.909 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.189 1.189 9 H -0.220 1.220 10 H -0.217 1.217 11 C 0.039 3.961 12 C -0.183 4.183 13 C -0.166 4.166 14 C 0.212 3.788 15 F -0.204 7.204 16 F -0.199 7.199 17 C -0.194 4.194 18 H 0.023 0.977 19 H 0.028 0.972 20 H 0.044 0.956 21 H 0.057 0.943 22 H 0.108 0.892 23 H 0.100 0.900 24 H 0.089 0.911 25 H 0.164 0.836 26 H 0.168 0.832 27 H 0.079 0.921 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.051 -12.733 -1.700 13.203 hybrid contribution -0.164 1.219 -0.167 1.241 sum 2.887 -11.514 -1.867 12.016 Atomic orbital electron populations 1.20398 0.83106 0.95300 0.97353 1.44146 1.01875 1.01623 1.84886 1.19666 0.98627 0.86910 1.34581 0.90873 1.25848 0.98574 1.02080 0.98493 1.70253 1.20493 1.27557 1.40429 0.85142 0.78025 0.79782 0.77115 1.18882 1.21988 1.21744 1.21998 0.95899 0.83658 0.94519 1.23499 1.01656 0.95460 0.97709 1.23554 1.00373 0.93820 0.98815 1.22179 0.79846 0.93076 0.83675 1.92935 1.45713 1.84961 1.96804 1.92934 1.94978 1.84668 1.47336 1.23560 1.01536 0.95963 0.98308 0.97652 0.97225 0.95555 0.94293 0.89228 0.90020 0.91086 0.83608 0.83176 0.92092 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.54 7.68 127.77 0.98 10.52 15 2 N -0.60 -31.03 3.13 -699.83 -2.19 -33.22 15 3 C -0.27 -14.95 9.66 84.03 0.81 -14.14 15 4 H 0.07 3.92 7.86 -2.91 -0.02 3.90 15 5 C -0.06 -3.15 5.11 84.86 0.43 -2.71 15 6 N -0.94 -56.95 10.67 21.65 0.23 -56.72 15 7 Si 0.97 45.61 29.57 68.60 2.03 47.64 15 8 H -0.26 -11.70 7.11 99.48 0.71 -10.99 15 9 H -0.29 -13.81 7.11 99.48 0.71 -13.10 15 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 15 11 C 0.15 5.83 4.35 45.52 0.20 6.03 15 12 C -0.14 -4.67 6.95 31.12 0.22 -4.46 15 13 C -0.15 -3.73 4.05 -10.27 -0.04 -3.77 15 14 C 0.27 6.27 5.30 71.98 0.38 6.65 15 15 F -0.22 -6.89 15.74 44.97 0.71 -6.19 15 16 F -0.22 -5.71 17.28 44.97 0.78 -4.93 15 17 C -0.15 -5.18 7.01 31.12 0.22 -4.97 15 18 H 0.01 0.30 7.34 -2.39 -0.02 0.28 15 19 H 0.01 0.52 7.32 -2.39 -0.02 0.50 15 20 H 0.03 1.22 6.14 -2.39 -0.01 1.20 15 21 H 0.25 14.51 8.31 -92.70 -0.77 13.74 15 22 H 0.09 3.41 8.05 -2.38 -0.02 3.39 15 23 H 0.08 2.36 8.14 -2.39 -0.02 2.34 15 24 H 0.07 2.63 5.84 -2.39 -0.01 2.61 15 25 H 0.15 2.75 8.14 -2.39 -0.02 2.73 15 26 H 0.15 2.22 8.14 -2.38 -0.02 2.20 15 27 H 0.06 2.35 6.45 -2.38 -0.02 2.33 15 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 Total: -1.00 -65.62 237.70 5.90 -59.72 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: 1.15 Total: 0.55 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 3.20 Total: -6.85 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -1.96 Total: -89.94 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 1.48 Total: -11.12 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -65.62 5.90 -59.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306158564.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.953 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds