Wall clock time and date at job start Mon Mar 30 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 H 1.08003 * 120.00271 * 119.99914 * 4 2 1 6 6 C 1.37886 * 119.99979 * 300.00171 * 4 2 1 7 7 N 1.31509 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99822 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47074 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.46997 * 119.99915 * 8 6 4 11 11 H 1.48501 * 109.46950 * 239.99839 * 8 6 4 12 12 N 1.46899 * 109.47163 * 239.99970 * 2 1 3 13 13 C 1.47443 * 111.00034 * 60.00345 * 12 2 1 14 14 C 1.54316 * 107.23323 * 123.25886 * 13 12 2 15 15 C 1.55140 * 103.02034 * 22.27882 * 14 13 12 16 16 F 1.39906 * 110.98487 * 82.44167 * 15 14 13 17 17 F 1.39897 * 110.98844 * 206.25353 * 15 14 13 18 18 C 1.47842 * 110.99834 * 180.84517 * 12 2 1 19 19 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 21 21 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 22 22 H 0.96999 * 120.00100 * 180.02562 * 7 6 4 23 23 H 1.09000 * 109.88503 * 242.66241 * 13 12 2 24 24 H 1.08999 * 109.88964 * 3.68347 * 13 12 2 25 25 H 1.08997 * 110.70629 * 140.66456 * 14 13 12 26 26 H 1.09002 * 110.70191 * 263.89487 * 14 13 12 27 27 H 1.08999 * 110.37439 * 332.46785 * 18 12 2 28 28 H 1.08998 * 110.37761 * 94.80463 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1857 4.8162 11 1 1.1676 -1.5866 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 1.5471 -0.0239 -2.4256 14 6 2.7949 0.3461 -3.2546 15 6 3.8713 -0.6370 -2.7238 16 9 3.7605 -1.8851 -3.3461 17 9 5.1565 -0.1094 -2.8884 18 6 3.4975 -0.7298 -1.2234 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 0.7094 1.1618 3.4844 23 1 0.9107 -0.7010 -2.9953 24 1 0.9909 0.8768 -2.1659 25 1 2.6141 0.1827 -4.3170 26 1 3.0899 1.3786 -3.0671 27 1 3.9075 0.1195 -0.6769 28 1 3.8604 -1.6660 -0.7992 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306242594.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:34 Heat of formation + Delta-G solvation = -115.643386 kcal Electronic energy + Delta-G solvation = -13980.579700 eV Core-core repulsion = 11280.382917 eV Total energy + Delta-G solvation = -2700.196782 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.87378 -48.06854 -39.62388 -35.50107 -32.76391 -30.41417 -28.75252 -27.08358 -23.72868 -22.45867 -21.22376 -18.91178 -18.23016 -17.86198 -16.80106 -16.72040 -15.99026 -15.54051 -15.08103 -14.65193 -14.44202 -14.38833 -14.04975 -13.79160 -13.24801 -12.89793 -12.74771 -12.64212 -12.31834 -12.20136 -12.08868 -11.86890 -11.48574 -10.97795 -10.54963 -9.11326 -8.14429 -6.26202 1.40546 1.43367 1.54445 2.40271 2.56220 2.87505 3.10239 3.15883 3.37467 3.69614 4.19721 4.20718 4.61199 4.64840 4.69586 4.75175 4.83667 5.01798 5.06690 5.10705 5.43063 5.68732 5.69895 6.14941 6.24639 6.54896 6.85893 7.43368 8.91502 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.044218 B = 0.010268 C = 0.009104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.070348 B = 2726.177112 C = 3074.837678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.212 3.788 3 H -0.023 1.023 4 C -0.524 4.524 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.531 5.531 13 C 0.036 3.964 14 C -0.160 4.160 15 C 0.270 3.730 16 F -0.193 7.193 17 F -0.198 7.198 18 C 0.029 3.971 19 H 0.030 0.970 20 H 0.062 0.938 21 H 0.037 0.963 22 H 0.263 0.737 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 -0.290 -9.330 9.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 H -0.005 1.005 4 C -0.562 4.562 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.205 1.205 12 N -0.256 5.256 13 C -0.092 4.092 14 C -0.199 4.199 15 C 0.233 3.767 16 F -0.174 7.174 17 F -0.179 7.179 18 C -0.100 4.100 19 H 0.050 0.950 20 H 0.081 0.919 21 H 0.056 0.944 22 H 0.072 0.928 23 H 0.108 0.892 24 H 0.086 0.914 25 H 0.140 0.860 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.605 -0.698 -9.185 9.573 hybrid contribution 0.680 0.390 1.004 1.274 sum 3.286 -0.308 -8.181 8.822 Atomic orbital electron populations 1.21678 0.96685 0.99505 1.00246 1.19315 0.93120 0.90435 0.86623 1.00531 1.21417 1.31352 1.12378 0.91085 0.92728 1.25658 0.95282 0.95711 1.01782 1.69994 1.37551 1.23958 1.24148 0.85509 0.78167 0.78614 0.79367 1.19456 1.20580 1.20519 1.63692 1.05970 1.52678 1.03257 1.22951 0.96649 0.98936 0.90627 1.23707 0.93417 0.99374 1.03406 1.22201 0.80249 0.79957 0.94322 1.92976 1.95974 1.44183 1.84299 1.92964 1.42192 1.86273 1.96513 1.23625 0.91027 1.03530 0.91866 0.95036 0.91899 0.94398 0.92790 0.89206 0.91436 0.85963 0.87532 0.91770 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.84 71.98 0.64 -5.15 15 2 C 0.21 10.41 1.65 44.17 0.07 10.48 15 3 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 15 4 C -0.52 -28.38 8.07 25.60 0.21 -28.17 15 5 H 0.05 2.98 7.22 -2.91 -0.02 2.96 15 6 C 0.01 0.80 5.30 84.66 0.45 1.25 15 7 N -0.92 -51.50 11.32 21.45 0.24 -51.26 15 8 Si 0.96 43.21 29.54 68.60 2.03 45.23 15 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 12 N -0.53 -22.07 5.02 -864.77 -4.34 -26.41 15 13 C 0.04 1.16 6.15 86.65 0.53 1.69 15 14 C -0.16 -4.28 6.57 31.77 0.21 -4.07 15 15 C 0.27 8.71 2.63 31.98 0.08 8.80 15 16 F -0.19 -6.50 17.23 44.97 0.78 -5.72 15 17 F -0.20 -6.38 17.23 44.97 0.78 -5.60 15 18 C 0.03 1.12 5.30 86.77 0.46 1.58 15 19 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 20 H 0.06 3.28 6.07 -2.39 -0.01 3.27 15 21 H 0.04 1.52 6.50 -2.39 -0.02 1.50 15 22 H 0.26 14.01 8.31 -92.71 -0.77 13.24 15 23 H 0.09 2.65 8.14 -2.39 -0.02 2.63 15 24 H 0.07 2.19 6.34 -2.39 -0.02 2.17 15 25 H 0.12 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.11 2.61 8.14 -2.39 -0.02 2.59 15 27 H 0.06 2.63 7.77 -2.39 -0.02 2.61 15 28 H 0.08 3.38 7.89 -2.39 -0.02 3.36 15 Total: -1.00 -58.15 236.94 3.28 -54.87 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 1.15 Total: 2.48 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 2.65 Total: -13.60 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -4.10 Total: -77.66 kcal Atomic # 9 Polarization: -12.88 SS G_CDS: 1.55 Total: -11.33 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -58.15 3.28 -54.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306242594.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.770 kcal (2) G-P(sol) polarization free energy of solvation -58.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds