Wall clock time and date at job start Mon Mar 30 2020 02:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00132 * 2 1 4 4 H 1.48489 * 109.47418 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47201 * 119.99857 * 3 2 1 6 6 H 1.48505 * 109.46731 * 239.99472 * 3 2 1 7 7 C 1.38808 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00403 * 164.93649 * 7 2 1 9 9 N 1.36943 * 120.00122 * 344.93855 * 7 2 1 10 10 C 1.46924 * 120.62995 * 331.01827 * 9 7 2 11 11 C 1.53197 * 108.77415 * 233.58592 * 10 9 7 12 12 C 1.53042 * 109.31056 * 305.36136 * 11 10 9 13 13 C 1.53041 * 109.53755 * 61.36512 * 12 11 10 14 14 C 1.46929 * 120.63170 * 150.73373 * 9 7 2 15 15 H 1.09001 * 109.58656 * 246.20481 * 14 9 7 16 16 C 1.53003 * 109.58379 * 6.62905 * 14 9 7 17 17 F 1.39899 * 109.47205 * 65.00126 * 16 14 9 18 18 F 1.39901 * 109.46575 * 184.99753 * 16 14 9 19 19 H 0.97007 * 119.99344 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.58594 * 353.36665 * 10 9 7 21 21 H 1.08999 * 109.59081 * 113.65382 * 10 9 7 22 22 H 1.08998 * 109.49525 * 65.31225 * 11 10 9 23 23 H 1.09004 * 109.49253 * 185.37994 * 11 10 9 24 24 H 1.08990 * 109.45655 * 181.38513 * 12 11 10 25 25 H 1.08995 * 109.45784 * 301.36057 * 12 11 10 26 26 H 1.09011 * 109.49404 * 58.58367 * 13 12 11 27 27 H 1.08995 * 109.49671 * 178.64747 * 13 12 11 28 28 H 1.08994 * 109.47020 * 304.99605 * 16 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0624 -1.2184 -0.2425 9 7 1.3607 -2.3676 0.3092 10 6 0.2023 -2.3622 1.2129 11 6 0.4521 -3.3685 2.3407 12 6 0.7712 -4.7376 1.7360 13 6 2.0405 -4.6388 0.8868 14 6 1.8053 -3.6463 -0.2619 15 1 1.0378 -4.0337 -0.9319 16 6 3.1082 -3.4367 -1.0362 17 9 4.1215 -3.0564 -0.1499 18 9 3.4689 -4.6290 -1.6731 19 1 -0.4849 0.8402 -0.0004 20 1 0.0724 -1.3655 1.6347 21 1 -0.6937 -2.6447 0.6602 22 1 1.2936 -3.0336 2.9472 23 1 -0.4386 -3.4443 2.9645 24 1 0.9252 -5.4611 2.5364 25 1 -0.0603 -5.0605 1.1095 26 1 2.8671 -4.2919 1.5071 27 1 2.2806 -5.6194 0.4759 28 1 2.9657 -2.6550 -1.7823 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306502249.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:48 Heat of formation + Delta-G solvation = -94.709586 kcal Electronic energy + Delta-G solvation = -14358.590502 eV Core-core repulsion = 11659.301477 eV Total energy + Delta-G solvation = -2699.289025 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.22249 -46.18766 -37.50664 -33.15999 -31.29773 -29.86326 -25.88496 -24.81255 -22.13876 -20.92618 -19.14730 -17.03099 -16.65932 -16.44953 -15.16203 -14.67413 -13.98433 -13.62789 -13.29348 -13.08236 -12.66552 -12.54508 -12.35561 -12.10897 -11.80251 -11.05375 -10.88475 -10.67335 -10.41795 -10.30504 -10.15525 -10.00470 -9.50003 -9.25625 -8.54022 -6.76590 -5.87364 -3.34032 3.34911 3.40702 3.43341 4.38769 4.57952 5.08855 5.19733 5.23689 5.46230 5.62716 5.72255 5.83343 5.92587 6.20492 6.28974 6.36364 6.55757 6.66184 6.71046 6.83285 6.91126 7.35490 7.61889 7.73597 8.34164 9.09874 9.71304 10.28095 11.20087 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.030955 B = 0.015503 C = 0.011542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.336308 B = 1805.714801 C = 2425.350464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.010 3.990 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.273 4.273 8 H 0.074 0.926 9 N -0.584 5.584 10 C 0.175 3.825 11 C -0.145 4.145 12 C -0.106 4.106 13 C -0.134 4.134 14 C 0.131 3.869 15 H 0.052 0.948 16 C 0.264 3.736 17 F -0.201 7.201 18 F -0.221 7.221 19 H 0.256 0.744 20 H 0.090 0.910 21 H 0.020 0.980 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -6.302 0.799 6.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.402 4.402 8 H 0.091 0.909 9 N -0.308 5.308 10 C 0.050 3.950 11 C -0.184 4.184 12 C -0.144 4.144 13 C -0.173 4.173 14 C 0.023 3.977 15 H 0.070 0.930 16 C 0.210 3.790 17 F -0.183 7.183 18 F -0.203 7.203 19 H 0.066 0.934 20 H 0.108 0.892 21 H 0.038 0.962 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.038 -6.154 0.792 6.530 hybrid contribution 0.481 0.808 0.027 0.941 sum 2.519 -5.346 0.819 5.966 Atomic orbital electron populations 1.70020 1.05334 1.25866 1.52956 1.25100 0.95296 0.98513 1.00058 0.86344 0.78926 0.82993 0.78377 1.21530 1.20794 1.20698 1.19323 0.92450 0.84398 1.43992 0.90871 1.43920 1.35144 1.00698 1.51026 1.20815 0.87721 0.98306 0.88204 1.22206 1.00078 0.96368 0.99779 1.21349 0.97257 0.97473 0.98296 1.22068 0.98665 0.98267 0.98298 1.21461 0.92226 0.90191 0.93801 0.93044 1.22074 0.85427 0.82709 0.88828 1.92899 1.63191 1.91185 1.71005 1.92887 1.93203 1.51223 1.82980 0.93401 0.89195 0.96192 0.92659 0.93271 0.93486 0.92789 0.91494 0.92745 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 11.14 55.49 0.62 -24.66 15 2 C 0.01 0.27 4.96 -17.43 -0.09 0.18 15 3 Si 0.90 21.36 29.58 -169.99 -5.03 16.34 15 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.27 -7.23 8.35 -15.06 -0.13 -7.36 15 8 H 0.07 1.92 5.52 -52.49 -0.29 1.63 15 9 N -0.58 -14.30 2.99 -164.51 -0.49 -14.80 15 10 C 0.17 4.11 5.28 -3.71 -0.02 4.09 15 11 C -0.15 -2.81 6.08 -26.61 -0.16 -2.97 15 12 C -0.11 -1.85 5.88 -26.69 -0.16 -2.01 15 13 C -0.13 -2.49 5.17 -26.39 -0.14 -2.62 15 14 C 0.13 2.75 3.11 -67.37 -0.21 2.54 15 15 H 0.05 1.08 8.14 -51.93 -0.42 0.65 15 16 C 0.26 5.28 4.06 37.16 0.15 5.43 15 17 F -0.20 -4.32 14.88 2.25 0.03 -4.29 15 18 F -0.22 -4.13 17.17 2.25 0.04 -4.09 15 19 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 20 H 0.09 2.36 6.06 -51.93 -0.31 2.04 15 21 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 22 H 0.05 1.11 8.14 -51.93 -0.42 0.68 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 26 H 0.07 1.32 7.53 -51.92 -0.39 0.93 15 27 H 0.05 0.91 8.11 -51.93 -0.42 0.49 15 28 H 0.12 2.31 7.31 -51.93 -0.38 1.93 15 LS Contribution 231.66 15.07 3.49 3.49 Total: -1.00 -27.75 231.66 -5.55 -33.30 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.47 Total: -2.58 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.75 Total: -2.71 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.13 Total: -39.46 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.07 Total: -8.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -27.75 -5.55 -33.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306502249.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.410 kcal (2) G-P(sol) polarization free energy of solvation -27.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds