Wall clock time and date at job start Mon Mar 30 2020 02:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00264 * 2 1 4 4 C 1.38234 * 120.00244 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99864 * 359.95693 * 4 3 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 4 3 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 4 9 9 N 1.46500 * 109.47298 * 89.99945 * 8 7 6 10 10 C 1.36940 * 119.99646 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00050 * 359.97438 * 10 9 8 12 12 C 1.38816 * 119.99480 * 179.97438 * 10 9 8 13 13 N 1.31612 * 120.00085 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99763 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46992 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46919 * 120.00036 * 14 12 10 17 17 H 1.48489 * 109.47545 * 240.00438 * 14 12 10 18 18 C 1.38234 * 119.99814 * 359.97438 * 7 6 4 19 19 H 1.09000 * 109.46827 * 90.00288 * 1 2 3 20 20 H 1.09003 * 109.47455 * 209.99996 * 1 2 3 21 21 H 1.08989 * 109.47334 * 330.00586 * 1 2 3 22 22 H 1.07999 * 119.99747 * 359.97084 * 3 2 1 23 23 H 1.09001 * 109.47242 * 269.97350 * 5 4 3 24 24 H 1.08999 * 109.47144 * 29.97997 * 5 4 3 25 25 H 1.09000 * 109.47061 * 149.97941 * 5 4 3 26 26 H 1.08000 * 120.00356 * 179.97438 * 6 4 3 27 27 H 1.09003 * 109.46871 * 209.99878 * 8 7 6 28 28 H 1.09001 * 109.47017 * 329.99216 * 8 7 6 29 29 H 0.96993 * 119.99824 * 0.02562 * 9 8 7 30 30 H 0.96998 * 120.00261 * 180.02562 * 13 12 10 31 31 H 1.08001 * 120.00279 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0020 7 6 3.5806 -1.1972 0.0023 8 6 4.3340 -2.5023 -0.0028 9 7 4.5833 -2.9278 1.3767 10 6 5.2578 -4.0939 1.6222 11 1 5.6057 -4.7002 0.7989 12 6 5.4945 -4.4968 2.9294 13 7 5.0701 -3.7582 3.9327 14 14 6.4140 -6.0879 3.2644 15 1 6.7804 -6.7285 1.9758 16 1 7.6466 -5.7937 4.0385 17 1 5.5465 -7.0061 4.0450 18 6 2.1982 -1.1972 0.0018 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5137 22 1 1.6582 2.1324 -0.0005 23 1 4.5165 2.8160 -1.0279 24 1 3.7446 3.2623 0.5127 25 1 5.2861 2.3723 0.5146 26 1 5.3517 -0.0001 0.0020 27 1 3.7430 -3.2610 -0.5159 28 1 5.2845 -2.3711 -0.5200 29 1 4.2706 -2.3834 2.1161 30 1 5.2358 -4.0395 4.8461 31 1 1.6582 -2.1325 0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306524625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:46 Heat of formation + Delta-G solvation = 17.106872 kcal Electronic energy + Delta-G solvation = -12604.448402 eV Core-core repulsion = 10464.237632 eV Total energy + Delta-G solvation = -2140.210769 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.22794 -34.87934 -33.24458 -32.32838 -30.04527 -27.22934 -26.36174 -25.45944 -22.68943 -20.40402 -20.03548 -17.11912 -15.92523 -15.36244 -14.69109 -14.08035 -13.83907 -13.18993 -13.11744 -13.07582 -12.72059 -12.38251 -12.33770 -12.02902 -11.57337 -11.30970 -10.90131 -10.83014 -10.63534 -10.40773 -9.98201 -9.73599 -8.87416 -8.23571 -8.18488 -6.90015 -5.73544 -3.02965 1.74314 1.74843 3.45071 3.50289 3.52913 4.07669 4.64293 5.01587 5.09554 5.22525 5.44939 5.52434 5.58605 5.67577 5.68880 5.75347 5.87176 5.98623 5.99284 6.02010 6.23247 6.32260 6.46004 6.64518 6.67676 6.90445 6.90543 7.23399 7.42804 7.72131 8.44374 9.55833 10.13164 10.49311 11.49136 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.042972 B = 0.007160 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.432643 B = 3909.793049 C = 4193.460162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.130 4.130 4 C -0.091 4.091 5 C -0.110 4.110 6 C -0.110 4.110 7 C -0.069 4.069 8 C 0.187 3.813 9 N -0.727 5.727 10 C -0.240 4.240 11 H 0.072 0.928 12 C -0.014 4.014 13 N -0.932 5.932 14 Si 0.908 3.092 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.291 1.291 18 C -0.110 4.110 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.114 0.886 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.120 0.880 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.386 0.614 30 H 0.254 0.746 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 10.215 -8.689 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.091 4.091 5 C -0.167 4.167 6 C -0.128 4.128 7 C -0.069 4.069 8 C 0.060 3.940 9 N -0.371 5.371 10 C -0.371 4.371 11 H 0.090 0.910 12 C -0.210 4.210 13 N -0.580 5.580 14 Si 0.739 3.261 15 H -0.205 1.205 16 H -0.219 1.219 17 H -0.219 1.219 18 C -0.128 4.128 19 H 0.084 0.916 20 H 0.084 0.916 21 H 0.080 0.920 22 H 0.132 0.868 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.138 0.862 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.219 0.781 30 H 0.064 0.936 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.824 10.045 -8.718 14.520 hybrid contribution 0.424 -0.730 0.587 1.028 sum -5.400 9.315 -8.131 13.493 Atomic orbital electron populations 1.20741 0.91643 1.02525 1.01781 1.19831 0.95689 0.93208 1.00409 1.20754 0.93462 0.97093 1.03517 1.19828 0.93771 0.95127 1.00407 1.20742 0.99975 0.94193 1.01782 1.20958 0.99790 0.91365 1.00706 1.20256 0.93763 0.95880 0.97036 1.19676 0.95539 0.89567 0.89258 1.42362 1.68221 1.25944 1.00586 1.19309 1.27818 0.98124 0.91885 0.91022 1.24763 1.01695 0.99029 0.95534 1.69689 1.51390 1.38849 0.98091 0.86098 0.79149 0.83082 0.77747 1.20529 1.21860 1.21855 1.20961 0.93816 0.97336 1.00715 0.91641 0.91582 0.91960 0.86817 0.91639 0.91960 0.91582 0.86220 0.95512 0.95507 0.78066 0.93561 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.01 36.01 0.36 -0.94 16 2 C -0.09 -1.39 5.88 -104.62 -0.62 -2.00 16 3 C -0.13 -1.89 9.36 -39.58 -0.37 -2.26 16 4 C -0.09 -1.39 5.88 -104.63 -0.62 -2.00 16 5 C -0.11 -1.30 10.01 36.00 0.36 -0.94 16 6 C -0.11 -1.92 9.36 -39.59 -0.37 -2.29 16 7 C -0.07 -1.31 5.25 -104.62 -0.55 -1.86 16 8 C 0.19 4.04 6.39 -5.19 -0.03 4.01 16 9 N -0.73 -19.39 5.59 -61.08 -0.34 -19.73 16 10 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 11 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 12 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 13 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 14 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 C -0.11 -1.92 9.36 -39.58 -0.37 -2.29 16 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 21 H 0.06 0.64 8.08 -51.94 -0.42 0.22 16 22 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 25 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 27 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.39 10.97 7.66 -40.82 -0.31 10.66 16 30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 269.27 15.07 4.06 4.06 Total: -1.00 -31.38 269.27 -7.52 -38.90 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.49 Total: 5.38 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.45 Total: -18.15 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.38 Total: -47.95 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.38 -7.52 -38.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306524625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.011 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds