Wall clock time and date at job start Mon Mar 30 2020 02:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00264 * 2 1 4 4 C 1.38234 * 120.00244 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99789 * 179.97438 * 4 3 2 6 6 C 1.38230 * 119.99864 * 359.95693 * 4 3 2 7 7 C 1.38235 * 120.00326 * 0.02562 * 6 4 3 8 8 C 1.50702 * 120.00236 * 179.70551 * 7 6 4 9 9 N 1.46500 * 109.47298 * 89.99945 * 8 7 6 10 10 C 1.36940 * 119.99646 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00050 * 359.97438 * 10 9 8 12 12 C 1.38816 * 119.99480 * 179.97438 * 10 9 8 13 13 N 1.31612 * 120.00085 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99763 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46992 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46919 * 120.00036 * 14 12 10 17 17 H 1.48489 * 109.47545 * 240.00438 * 14 12 10 18 18 C 1.38234 * 119.99814 * 359.97438 * 7 6 4 19 19 H 1.09000 * 109.46827 * 90.00288 * 1 2 3 20 20 H 1.09003 * 109.47455 * 209.99996 * 1 2 3 21 21 H 1.08989 * 109.47334 * 330.00586 * 1 2 3 22 22 H 1.07999 * 119.99747 * 359.97084 * 3 2 1 23 23 H 1.09001 * 109.47242 * 269.97350 * 5 4 3 24 24 H 1.08999 * 109.47144 * 29.97997 * 5 4 3 25 25 H 1.09000 * 109.47061 * 149.97941 * 5 4 3 26 26 H 1.08000 * 120.00356 * 179.97438 * 6 4 3 27 27 H 1.09003 * 109.46871 * 209.99878 * 8 7 6 28 28 H 1.09001 * 109.47017 * 329.99216 * 8 7 6 29 29 H 0.96993 * 119.99824 * 0.02562 * 9 8 7 30 30 H 0.96998 * 120.00261 * 180.02562 * 13 12 10 31 31 H 1.08001 * 120.00279 * 180.02562 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5022 0.0000 6 6 4.2717 0.0000 0.0020 7 6 3.5806 -1.1972 0.0023 8 6 4.3340 -2.5023 -0.0028 9 7 4.5833 -2.9278 1.3767 10 6 5.2578 -4.0939 1.6222 11 1 5.6057 -4.7002 0.7989 12 6 5.4945 -4.4968 2.9294 13 7 5.0701 -3.7582 3.9327 14 14 6.4140 -6.0879 3.2644 15 1 6.7804 -6.7285 1.9758 16 1 7.6466 -5.7937 4.0385 17 1 5.5465 -7.0061 4.0450 18 6 2.1982 -1.1972 0.0018 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5137 22 1 1.6582 2.1324 -0.0005 23 1 4.5165 2.8160 -1.0279 24 1 3.7446 3.2623 0.5127 25 1 5.2861 2.3723 0.5146 26 1 5.3517 -0.0001 0.0020 27 1 3.7430 -3.2610 -0.5159 28 1 5.2845 -2.3711 -0.5200 29 1 4.2706 -2.3834 2.1161 30 1 5.2358 -4.0395 4.8461 31 1 1.6582 -2.1325 0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306524625.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:45 Heat of formation + Delta-G solvation = -1.431970 kcal Electronic energy + Delta-G solvation = -12605.252306 eV Core-core repulsion = 10464.237632 eV Total energy + Delta-G solvation = -2141.014674 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.49266 -36.75193 -34.34935 -34.12643 -31.88062 -28.34255 -27.51006 -27.23649 -24.67899 -21.56388 -21.48886 -19.25943 -17.21464 -16.68462 -16.63087 -15.74993 -15.29616 -14.73722 -14.64779 -14.12998 -13.95891 -13.75040 -13.56938 -13.30059 -13.07275 -12.85928 -12.62902 -12.34793 -12.12717 -11.89546 -11.85598 -11.61994 -11.02210 -9.53572 -9.40970 -9.06383 -7.97866 -5.28991 0.45572 0.49320 1.45932 1.47621 1.58070 2.53048 2.82933 3.34801 3.89249 3.93031 3.98852 4.20989 4.28073 4.49662 4.51400 4.66158 4.76164 4.76499 4.84613 4.85694 4.89536 5.07520 5.09749 5.29305 5.40760 5.44713 5.68135 5.68784 5.83419 6.19015 6.22667 7.28777 8.00944 8.27668 9.25815 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.042972 B = 0.007160 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.432643 B = 3909.793049 C = 4193.460162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.128 4.128 4 C -0.091 4.091 5 C -0.109 4.109 6 C -0.130 4.130 7 C -0.092 4.092 8 C 0.189 3.811 9 N -0.739 5.739 10 C -0.251 4.251 11 H 0.078 0.922 12 C -0.076 4.076 13 N -0.970 5.970 14 Si 0.980 3.020 15 H -0.265 1.265 16 H -0.291 1.291 17 H -0.291 1.291 18 C -0.130 4.130 19 H 0.084 0.916 20 H 0.062 0.938 21 H 0.082 0.918 22 H 0.149 0.851 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.373 0.627 30 H 0.252 0.748 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 11.325 -9.407 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.091 4.091 5 C -0.165 4.165 6 C -0.149 4.149 7 C -0.093 4.093 8 C 0.063 3.937 9 N -0.381 5.381 10 C -0.382 4.382 11 H 0.096 0.904 12 C -0.268 4.268 13 N -0.620 5.620 14 Si 0.808 3.192 15 H -0.189 1.189 16 H -0.218 1.218 17 H -0.218 1.218 18 C -0.149 4.149 19 H 0.102 0.898 20 H 0.081 0.919 21 H 0.101 0.899 22 H 0.167 0.833 23 H 0.102 0.898 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.204 0.796 30 H 0.061 0.939 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.471 11.157 -9.485 16.010 hybrid contribution 0.574 -0.989 0.740 1.362 sum -5.897 10.168 -8.745 14.651 Atomic orbital electron populations 1.20807 0.89028 1.03412 1.03250 1.20237 0.97643 0.92503 0.98680 1.21199 0.93333 0.98230 1.01845 1.20234 0.94540 0.95607 0.98683 1.20808 0.99705 0.92740 1.03248 1.21040 0.99754 0.92024 1.02055 1.20087 0.94470 0.95013 0.99695 1.19718 0.95932 0.91313 0.86744 1.42553 1.68037 1.25386 1.02166 1.19735 1.27394 0.98800 0.92306 0.90386 1.25665 1.03118 1.02698 0.95317 1.69853 1.53064 1.40832 0.98289 0.84981 0.77465 0.78790 0.77935 1.18888 1.21781 1.21777 1.21044 0.93337 0.98439 1.02055 0.89760 0.91878 0.89924 0.83327 0.89759 0.89920 0.91885 0.86785 0.95427 0.95425 0.79585 0.93882 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 10.01 71.24 0.71 -1.54 16 2 C -0.09 -2.59 5.88 -19.86 -0.12 -2.70 16 3 C -0.13 -3.35 9.36 22.27 0.21 -3.14 16 4 C -0.09 -2.59 5.88 -19.87 -0.12 -2.71 16 5 C -0.11 -2.25 10.01 71.23 0.71 -1.54 16 6 C -0.13 -4.57 9.36 22.27 0.21 -4.36 16 7 C -0.09 -3.59 5.25 -19.87 -0.10 -3.69 16 8 C 0.19 8.45 6.39 85.63 0.55 8.99 16 9 N -0.74 -40.59 5.59 -347.17 -1.94 -42.53 16 10 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 11 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 12 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 13 N -0.97 -61.46 13.06 21.65 0.28 -61.18 16 14 Si 0.98 47.21 29.55 68.60 2.03 49.24 16 15 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 18 C -0.13 -4.57 9.36 22.27 0.21 -4.36 16 19 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 21 H 0.08 1.40 8.08 -2.39 -0.02 1.38 16 22 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 25 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 26 H 0.11 3.99 8.06 -2.91 -0.02 3.96 16 27 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 28 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 29 H 0.37 22.01 7.66 -92.71 -0.71 21.30 16 30 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.11 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -67.68 269.27 4.33 -63.36 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.39 Total: 24.06 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 3.57 Total: -32.95 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -1.66 Total: -103.71 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -67.68 4.33 -63.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306524625.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.925 kcal (2) G-P(sol) polarization free energy of solvation -67.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds