Wall clock time and date at job start Mon Mar 30 2020 02:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50691 * 109.47461 * 2 1 4 4 C 1.38308 * 119.92435 * 89.99568 * 3 2 1 5 5 C 1.38092 * 120.07380 * 180.02562 * 4 3 2 6 6 C 1.38922 * 119.92504 * 359.97438 * 5 4 3 7 7 N 1.39669 * 120.07608 * 180.02562 * 6 5 4 8 8 C 1.38899 * 119.85502 * 359.97438 * 6 5 4 9 9 C 1.50698 * 120.04203 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.46993 * 280.00466 * 9 8 6 11 11 H 1.07991 * 120.00449 * 359.72131 * 10 9 8 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 C 1.38124 * 119.91676 * 0.25306 * 8 6 5 19 19 H 1.08997 * 109.46798 * 300.00053 * 1 2 3 20 20 H 1.09001 * 109.46708 * 59.99696 * 1 2 3 21 21 H 1.09000 * 109.47088 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46798 * 239.99947 * 2 1 3 23 23 H 1.09001 * 109.46708 * 120.00304 * 2 1 3 24 24 H 1.07993 * 119.96292 * 0.02562 * 4 3 2 25 25 H 1.08001 * 120.03678 * 179.97438 * 5 4 3 26 26 H 0.97007 * 120.00426 * 179.97438 * 7 6 5 27 27 H 0.97003 * 120.00206 * 359.97438 * 7 6 5 28 28 H 1.08998 * 109.47083 * 159.99882 * 9 8 6 29 29 H 1.09001 * 109.46875 * 40.00145 * 9 8 6 30 30 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 31 31 H 1.08006 * 119.95784 * 179.74553 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2624 2.0712 1.1987 5 6 2.7223 3.3733 1.2023 6 6 2.9545 4.0296 0.0001 7 7 3.4201 5.3464 0.0001 8 6 2.7235 3.3731 -1.2019 9 6 2.9734 4.0812 -2.5085 10 6 1.8081 4.9840 -2.8214 11 1 0.9683 5.0361 -2.1445 12 6 1.8118 5.7397 -3.9748 13 7 2.8347 5.6766 -4.7990 14 14 0.3639 6.8530 -4.3665 15 1 -0.6509 6.7433 -3.2879 16 1 0.8326 8.2585 -4.4648 17 1 -0.2414 6.4415 -5.6587 18 6 2.2591 2.0723 -1.1982 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.0821 1.5603 2.1329 25 1 2.9012 3.8808 2.1387 26 1 3.5822 5.8036 -0.8400 27 1 3.5814 5.8039 0.8401 28 1 3.0871 3.3454 -3.3046 29 1 3.8834 4.6762 -2.4310 30 1 2.8374 6.2085 -5.6101 31 1 2.0754 1.5625 -2.1326 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306814389.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:15 Heat of formation + Delta-G solvation = -20.651317 kcal Electronic energy + Delta-G solvation = -12882.679033 eV Core-core repulsion = 10740.830946 eV Total energy + Delta-G solvation = -2141.848087 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38743 -36.44260 -35.16146 -33.15281 -32.70761 -29.35863 -28.19244 -25.20816 -24.12656 -22.74004 -20.69530 -18.47303 -17.71747 -17.69425 -16.62475 -15.77477 -15.30534 -14.67639 -14.54659 -14.34397 -14.02540 -13.83712 -13.48808 -13.23597 -12.82713 -12.73180 -12.53588 -12.27652 -11.80098 -11.55571 -11.50478 -11.14634 -11.00642 -10.59970 -9.42051 -8.26808 -7.96176 -6.30767 0.76430 0.92570 1.36770 1.38617 1.51284 2.39392 3.10967 3.16578 3.33215 4.13503 4.15324 4.33292 4.45676 4.66584 4.71042 4.83206 4.87532 5.13549 5.17819 5.23496 5.27384 5.37286 5.44553 5.48756 5.67480 5.77140 5.94236 6.09920 6.20260 6.31168 6.81220 6.83838 7.24350 7.37637 8.90081 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.033341 B = 0.009263 C = 0.008214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.606537 B = 3021.965731 C = 3407.863134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C -0.150 4.150 4 C -0.087 4.087 5 C -0.205 4.205 6 C 0.199 3.801 7 N -0.871 5.871 8 C -0.150 4.150 9 C 0.071 3.929 10 C -0.514 4.514 11 H 0.047 0.953 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.960 3.040 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.279 1.279 18 C -0.095 4.095 19 H 0.055 0.945 20 H 0.035 0.965 21 H 0.072 0.928 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.145 0.855 25 H 0.138 0.862 26 H 0.398 0.602 27 H 0.401 0.599 28 H -0.007 1.007 29 H 0.004 0.996 30 H 0.264 0.736 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 -6.425 11.627 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.152 4.152 4 C -0.106 4.106 5 C -0.228 4.228 6 C 0.093 3.907 7 N -0.411 5.411 8 C -0.155 4.155 9 C 0.034 3.966 10 C -0.552 4.552 11 H 0.065 0.935 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.786 3.214 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.205 1.205 18 C -0.113 4.113 19 H 0.074 0.926 20 H 0.055 0.945 21 H 0.091 0.909 22 H 0.081 0.919 23 H 0.104 0.896 24 H 0.163 0.837 25 H 0.156 0.844 26 H 0.228 0.772 27 H 0.231 0.769 28 H 0.011 0.989 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.926 -6.382 11.468 13.265 hybrid contribution -0.332 1.190 -0.908 1.533 sum -2.258 -5.192 10.560 11.982 Atomic orbital electron populations 1.21741 0.94950 1.01991 1.01362 1.20399 0.96018 0.91486 1.02844 1.19835 1.05130 0.97866 0.92388 1.20906 0.98150 0.93812 0.97706 1.20764 1.09525 0.96809 0.95685 1.17844 0.93591 0.85921 0.93317 1.42503 1.75470 1.12069 1.11017 1.19970 1.05150 0.95516 0.94847 1.17833 0.95613 0.93761 0.89442 1.21321 1.04069 1.23956 1.05870 0.93500 1.25857 0.98724 0.98584 0.96017 1.70086 1.31910 1.42146 1.12751 0.85465 0.79363 0.78597 0.78019 1.19414 1.20012 1.20518 1.20744 0.99051 0.93736 0.97814 0.92573 0.94549 0.90865 0.91873 0.89589 0.83742 0.84414 0.77248 0.76948 0.98887 0.97788 0.92693 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.90 71.98 0.71 -2.70 16 2 C -0.07 -1.80 6.06 29.85 0.18 -1.62 16 3 C -0.15 -5.01 5.14 -19.84 -0.10 -5.12 16 4 C -0.09 -2.65 9.69 22.25 0.22 -2.43 16 5 C -0.20 -6.72 9.90 22.40 0.22 -6.49 16 6 C 0.20 7.95 6.73 38.21 0.26 8.20 16 7 N -0.87 -31.69 9.00 -51.37 -0.46 -32.15 16 8 C -0.15 -6.95 5.09 -19.73 -0.10 -7.05 16 9 C 0.07 3.84 4.48 29.10 0.13 3.97 16 10 C -0.51 -29.40 8.86 25.60 0.23 -29.18 16 11 H 0.05 2.72 7.74 -2.92 -0.02 2.69 16 12 C 0.01 0.35 5.46 84.66 0.46 0.82 16 13 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 14 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 C -0.09 -3.94 9.32 22.25 0.21 -3.73 16 19 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 20 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.61 8.08 -2.39 -0.02 1.59 16 23 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16 24 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 25 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 26 H 0.40 16.37 6.87 -92.70 -0.64 15.73 16 27 H 0.40 11.30 8.84 -92.71 -0.82 10.48 16 28 H -0.01 -0.43 8.01 -2.39 -0.02 -0.45 16 29 H 0.00 0.23 7.09 -2.39 -0.02 0.21 16 30 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 31 H 0.10 4.26 8.04 -2.91 -0.02 4.24 16 Total: -1.00 -64.56 265.35 3.93 -60.64 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: -0.33 Total: 25.61 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: 2.41 Total: -45.33 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -0.18 Total: -87.61 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.56 3.93 -60.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306814389.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.984 kcal (2) G-P(sol) polarization free energy of solvation -64.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds