Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47365 * 2 1 4 4 C 1.38125 * 119.95855 * 90.00147 * 3 2 1 5 5 C 1.38893 * 119.92196 * 180.02562 * 4 3 2 6 6 N 1.39680 * 120.07440 * 179.97438 * 5 4 3 7 7 C 1.38931 * 119.85309 * 359.97438 * 5 4 3 8 8 C 1.38087 * 119.92207 * 0.02562 * 7 5 4 9 9 C 1.50705 * 119.96258 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.46792 * 270.02275 * 9 8 7 11 11 H 1.08000 * 120.00426 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99606 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00228 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00412 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47109 * 89.99638 * 14 12 10 16 16 H 1.48493 * 109.47351 * 210.00529 * 14 12 10 17 17 H 1.48503 * 109.46794 * 330.00141 * 14 12 10 18 18 C 1.38260 * 119.96394 * 269.98132 * 3 2 1 19 19 H 1.08999 * 109.46735 * 299.99876 * 1 2 3 20 20 H 1.08994 * 109.47168 * 59.99848 * 1 2 3 21 21 H 1.08995 * 109.47003 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47173 * 239.99958 * 2 1 3 23 23 H 1.09006 * 109.47309 * 120.00560 * 2 1 3 24 24 H 1.07995 * 120.04491 * 359.72350 * 4 3 2 25 25 H 0.96993 * 120.00084 * 359.97438 * 6 5 4 26 26 H 0.97004 * 119.99805 * 179.97438 * 6 5 4 27 27 H 1.08001 * 120.04149 * 180.02562 * 7 5 4 28 28 H 1.09003 * 109.46905 * 30.01921 * 9 8 7 29 29 H 1.09001 * 109.46952 * 150.02055 * 9 8 7 30 30 H 0.97001 * 120.00500 * 179.97438 * 13 12 10 31 31 H 1.07998 * 119.92345 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0711 1.1967 5 6 2.7249 3.3807 1.1958 6 7 2.9580 4.0415 2.4041 7 6 2.9551 4.0320 -0.0096 8 6 2.7231 3.3759 -1.2023 9 6 2.9720 4.0818 -2.5104 10 6 1.7154 4.7906 -2.9457 11 1 0.8254 4.7352 -2.3364 12 6 1.7016 5.5090 -4.1224 13 7 0.6049 6.1272 -4.5027 14 14 3.2407 5.6043 -5.1767 15 1 3.2435 4.4835 -6.1509 16 1 3.2604 6.8963 -5.9084 17 1 4.4419 5.5087 -4.3088 18 6 2.2629 2.0717 -1.1978 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 2.0781 1.5635 2.1320 25 1 2.7965 3.5860 3.2450 26 1 3.2814 4.9561 2.4022 27 1 3.3152 5.0502 -0.0138 28 1 3.7742 4.8089 -2.3839 29 1 3.2589 3.3524 -3.2679 30 1 0.5953 6.6329 -5.3303 31 1 2.0830 1.5606 -2.1320 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306836153.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = 0.180311 kcal Electronic energy + Delta-G solvation = -12736.705323 eV Core-core repulsion = 10595.760563 eV Total energy + Delta-G solvation = -2140.944760 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.98345 -34.80891 -34.12213 -32.25767 -30.15607 -27.96211 -27.26734 -23.57338 -22.84961 -20.64658 -19.52692 -16.71904 -16.43025 -15.87877 -15.23704 -14.33920 -14.13075 -13.77150 -13.08795 -12.85532 -12.78007 -12.13271 -11.93079 -11.57565 -11.45964 -11.19088 -10.81086 -10.58837 -10.36392 -10.25171 -9.79765 -9.56366 -9.25626 -8.54135 -7.78244 -6.95505 -6.03171 -4.01471 2.13092 2.34382 3.31473 3.38840 3.42382 4.25827 4.45196 4.56274 5.18551 5.29849 5.31289 5.64446 5.66662 5.81394 5.96152 6.01721 6.16861 6.19525 6.30711 6.46826 6.50534 6.75629 6.91824 7.05845 7.09776 7.27353 7.53012 7.72801 7.76889 8.02812 8.13682 8.55252 9.03198 9.57344 11.09898 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.031965 B = 0.009007 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.738122 B = 3107.847774 C = 3556.785047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.044 4.044 4 C -0.218 4.218 5 C 0.209 3.791 6 N -0.886 5.886 7 C -0.199 4.199 8 C 0.016 3.984 9 C 0.013 3.987 10 C -0.508 4.508 11 H 0.074 0.926 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.172 4.172 19 H 0.053 0.947 20 H 0.060 0.940 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.390 0.610 26 H 0.394 0.606 27 H 0.114 0.886 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.263 0.737 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -8.442 10.675 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.045 4.045 4 C -0.241 4.241 5 C 0.107 3.893 6 N -0.426 5.426 7 C -0.221 4.221 8 C 0.016 3.984 9 C -0.024 4.024 10 C -0.546 4.546 11 H 0.092 0.908 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.189 1.189 18 C -0.192 4.192 19 H 0.072 0.928 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.124 0.876 25 H 0.217 0.783 26 H 0.221 0.779 27 H 0.132 0.868 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.154 -8.354 10.475 14.027 hybrid contribution 0.675 0.445 -0.289 0.858 sum 4.828 -7.909 10.186 13.770 Atomic orbital electron populations 1.21730 0.95054 1.00936 1.02562 1.20480 0.96006 0.93355 1.01929 1.19489 0.97002 0.95134 0.92826 1.20120 1.12306 0.94423 0.97261 1.17720 0.93905 0.91512 0.86210 1.42362 1.78085 1.17213 1.04945 1.20455 1.10714 1.00355 0.90615 1.19971 0.90517 0.92494 0.95463 1.18825 0.98185 0.95313 0.90075 1.20928 0.96767 1.30101 1.06831 0.90807 1.25000 0.95984 0.95015 0.97344 1.69904 1.27198 1.33505 1.23426 0.86808 0.84352 0.77558 0.80827 1.20170 1.21315 1.18946 1.20685 1.06144 0.95547 0.96776 0.92829 0.92084 0.93037 0.91345 0.91881 0.87554 0.78258 0.77863 0.86782 0.95546 0.95813 0.92681 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.89 37.16 0.37 -1.54 16 2 C -0.08 -1.10 6.06 -27.88 -0.17 -1.27 16 3 C -0.04 -0.76 5.13 -104.66 -0.54 -1.30 16 4 C -0.22 -3.62 9.55 -39.38 -0.38 -4.00 16 5 C 0.21 3.60 6.75 -83.78 -0.57 3.04 16 6 N -0.89 -11.53 9.09 32.41 0.29 -11.23 16 7 C -0.20 -4.00 9.55 -39.38 -0.38 -4.38 16 8 C 0.02 0.36 5.07 -104.65 -0.53 -0.17 16 9 C 0.01 0.33 4.17 -29.03 -0.12 0.20 16 10 C -0.51 -14.76 9.65 -34.44 -0.33 -15.10 16 11 H 0.07 2.36 7.98 -52.49 -0.42 1.94 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 14 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 18 C -0.17 -3.46 9.35 -39.55 -0.37 -3.83 16 19 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 23 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 24 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 25 H 0.39 4.07 8.84 -40.82 -0.36 3.71 16 26 H 0.39 4.56 8.84 -40.82 -0.36 4.20 16 27 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 28 H 0.03 0.65 7.14 -51.93 -0.37 0.27 16 29 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 265.31 15.07 4.00 4.00 Total: -1.00 -31.56 265.31 -7.15 -38.72 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.44 Total: 5.13 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -3.11 Total: -26.44 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 1.07 Total: -38.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.56 -7.15 -38.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306836153.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.900 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds