Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47365 * 2 1 4 4 C 1.38125 * 119.95855 * 90.00147 * 3 2 1 5 5 C 1.38893 * 119.92196 * 180.02562 * 4 3 2 6 6 N 1.39680 * 120.07440 * 179.97438 * 5 4 3 7 7 C 1.38931 * 119.85309 * 359.97438 * 5 4 3 8 8 C 1.38087 * 119.92207 * 0.02562 * 7 5 4 9 9 C 1.50705 * 119.96258 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.46792 * 270.02275 * 9 8 7 11 11 H 1.08000 * 120.00426 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99606 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00228 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00412 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47109 * 89.99638 * 14 12 10 16 16 H 1.48493 * 109.47351 * 210.00529 * 14 12 10 17 17 H 1.48503 * 109.46794 * 330.00141 * 14 12 10 18 18 C 1.38260 * 119.96394 * 269.98132 * 3 2 1 19 19 H 1.08999 * 109.46735 * 299.99876 * 1 2 3 20 20 H 1.08994 * 109.47168 * 59.99848 * 1 2 3 21 21 H 1.08995 * 109.47003 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47173 * 239.99958 * 2 1 3 23 23 H 1.09006 * 109.47309 * 120.00560 * 2 1 3 24 24 H 1.07995 * 120.04491 * 359.72350 * 4 3 2 25 25 H 0.96993 * 120.00084 * 359.97438 * 6 5 4 26 26 H 0.97004 * 119.99805 * 179.97438 * 6 5 4 27 27 H 1.08001 * 120.04149 * 180.02562 * 7 5 4 28 28 H 1.09003 * 109.46905 * 30.01921 * 9 8 7 29 29 H 1.09001 * 109.46952 * 150.02055 * 9 8 7 30 30 H 0.97001 * 120.00500 * 179.97438 * 13 12 10 31 31 H 1.07998 * 119.92345 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0711 1.1967 5 6 2.7249 3.3807 1.1958 6 7 2.9580 4.0415 2.4041 7 6 2.9551 4.0320 -0.0096 8 6 2.7231 3.3759 -1.2023 9 6 2.9720 4.0818 -2.5104 10 6 1.7154 4.7906 -2.9457 11 1 0.8254 4.7352 -2.3364 12 6 1.7016 5.5090 -4.1224 13 7 0.6049 6.1272 -4.5027 14 14 3.2407 5.6043 -5.1767 15 1 3.2435 4.4835 -6.1509 16 1 3.2604 6.8963 -5.9084 17 1 4.4419 5.5087 -4.3088 18 6 2.2629 2.0717 -1.1978 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 2.0781 1.5635 2.1320 25 1 2.7965 3.5860 3.2450 26 1 3.2814 4.9561 2.4022 27 1 3.3152 5.0502 -0.0138 28 1 3.7742 4.8089 -2.3839 29 1 3.2589 3.3524 -3.2679 30 1 0.5953 6.6329 -5.3303 31 1 2.0830 1.5606 -2.1320 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306836153.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = -20.180034 kcal Electronic energy + Delta-G solvation = -12737.588214 eV Core-core repulsion = 10595.760563 eV Total energy + Delta-G solvation = -2141.827651 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39914 -36.08054 -35.81759 -34.18167 -31.66970 -29.41473 -28.92811 -25.01886 -24.56812 -22.05435 -21.02641 -18.96991 -17.67677 -17.28244 -16.64600 -16.23261 -15.54001 -15.04767 -14.76023 -14.37667 -14.17696 -13.91382 -13.41396 -13.21758 -12.89388 -12.66158 -12.43906 -12.07442 -12.00887 -11.71930 -11.67708 -11.29643 -10.94175 -10.79174 -9.30556 -8.30737 -8.27185 -6.35045 0.67867 0.87448 1.35471 1.37216 1.49676 2.35009 3.03153 3.06691 3.14221 3.97370 4.11845 4.38113 4.43844 4.58559 4.64374 4.73900 4.82920 4.93888 5.05008 5.07903 5.13008 5.31606 5.35261 5.44145 5.51192 5.59999 5.86982 6.10122 6.16284 6.29220 6.68742 6.74291 7.13081 7.27905 8.86480 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.031965 B = 0.009007 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.738122 B = 3107.847774 C = 3556.785047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.039 4.039 4 C -0.216 4.216 5 C 0.216 3.784 6 N -0.868 5.868 7 C -0.224 4.224 8 C -0.016 4.016 9 C 0.020 3.980 10 C -0.517 4.517 11 H 0.025 0.975 12 C 0.007 3.993 13 N -0.949 5.949 14 Si 0.952 3.048 15 H -0.264 1.264 16 H -0.280 1.280 17 H -0.248 1.248 18 C -0.198 4.198 19 H 0.054 0.946 20 H 0.035 0.965 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.142 0.858 25 H 0.407 0.593 26 H 0.402 0.598 27 H 0.109 0.891 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.268 0.732 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.607 -9.888 12.174 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.039 4.039 4 C -0.239 4.239 5 C 0.111 3.889 6 N -0.409 5.409 7 C -0.247 4.247 8 C -0.017 4.017 9 C -0.017 4.017 10 C -0.555 4.555 11 H 0.043 0.957 12 C -0.190 4.190 13 N -0.590 5.590 14 Si 0.775 3.225 15 H -0.189 1.189 16 H -0.206 1.206 17 H -0.171 1.171 18 C -0.218 4.218 19 H 0.073 0.927 20 H 0.054 0.946 21 H 0.097 0.903 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.160 0.840 25 H 0.238 0.762 26 H 0.231 0.769 27 H 0.127 0.873 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.524 -9.800 12.026 16.467 hybrid contribution 0.156 0.875 -0.607 1.076 sum 5.680 -8.925 11.419 15.567 Atomic orbital electron populations 1.21716 0.94591 1.02393 1.01396 1.20568 0.96244 0.91159 1.03631 1.19882 0.95309 0.96781 0.91952 1.20531 1.10854 0.94078 0.98403 1.17778 0.92644 0.91903 0.86560 1.42300 1.76738 1.17563 1.04307 1.20476 1.12321 1.00460 0.91415 1.19877 0.93226 0.93666 0.94915 1.18663 0.95892 0.95175 0.91972 1.21118 0.97022 1.30827 1.06530 0.95673 1.25998 0.99839 0.94351 0.98835 1.70060 1.29899 1.34674 1.24345 0.85630 0.79955 0.78057 0.78890 1.18891 1.20569 1.17106 1.20738 1.07751 0.95312 0.97958 0.92687 0.94572 0.90299 0.90845 0.89001 0.84011 0.76249 0.76899 0.87304 0.95365 0.95394 0.92333 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.89 71.98 0.71 -2.73 16 2 C -0.08 -1.95 6.06 29.85 0.18 -1.77 16 3 C -0.04 -1.27 5.13 -19.89 -0.10 -1.37 16 4 C -0.22 -6.55 9.55 22.40 0.21 -6.33 16 5 C 0.22 7.06 6.75 38.21 0.26 7.32 16 6 N -0.87 -20.16 9.09 -51.36 -0.47 -20.63 16 7 C -0.22 -9.06 9.55 22.40 0.21 -8.85 16 8 C -0.02 -0.73 5.07 -19.88 -0.10 -0.83 16 9 C 0.02 1.02 4.17 29.10 0.12 1.15 16 10 C -0.52 -31.38 9.65 25.60 0.25 -31.13 16 11 H 0.02 1.71 7.98 -2.91 -0.02 1.68 16 12 C 0.01 0.39 5.47 84.65 0.46 0.86 16 13 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 14 Si 0.95 45.20 27.47 68.60 1.88 47.08 16 15 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 18 C -0.20 -8.07 9.35 22.29 0.21 -7.86 16 19 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 20 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 23 H 0.09 1.78 8.08 -2.38 -0.02 1.76 16 24 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 25 H 0.41 6.94 8.84 -92.71 -0.82 6.12 16 26 H 0.40 8.38 8.84 -92.70 -0.82 7.56 16 27 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 28 H 0.03 1.39 7.14 -2.39 -0.02 1.37 16 29 H 0.03 1.36 7.51 -2.39 -0.02 1.34 16 30 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 31 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -70.77 265.31 3.56 -67.21 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -0.57 Total: 18.53 kcal Atomic # 6 Polarization: -53.98 SS G_CDS: 2.42 Total: -51.56 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -0.17 Total: -81.26 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -70.77 3.56 -67.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306836153.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.030 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds