Wall clock time and date at job start Mon Mar 30 2020 02:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00490 * 2 1 4 4 H 1.48490 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47167 * 300.00586 * 3 2 1 6 6 H 1.48506 * 109.46785 * 60.00178 * 3 2 1 7 7 C 1.37884 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99835 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00075 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.05479 * 326.40911 * 11 10 9 13 13 C 1.54261 * 110.03630 * 87.83082 * 11 10 9 14 14 C 1.54888 * 104.19672 * 142.89148 * 13 11 10 15 15 C 1.54891 * 102.75120 * 322.06034 * 14 13 11 16 16 C 1.53876 * 110.03033 * 205.00031 * 11 10 9 17 17 F 1.39903 * 110.03215 * 359.97438 * 16 11 10 18 18 F 1.39898 * 110.03577 * 121.42643 * 16 11 10 19 19 H 0.97005 * 119.99548 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47322 * 60.00164 * 9 7 2 21 21 H 1.09001 * 109.47332 * 300.00127 * 9 7 2 22 22 H 1.00900 * 110.99276 * 303.95141 * 10 9 7 23 23 H 1.09000 * 110.48928 * 261.57157 * 13 11 10 24 24 H 1.09001 * 110.48691 * 24.08184 * 13 11 10 25 25 H 1.09005 * 110.75648 * 80.37263 * 14 13 11 26 26 H 1.08999 * 110.75852 * 203.74195 * 14 13 11 27 27 H 1.09004 * 110.48613 * 279.26383 * 15 14 13 28 28 H 1.08994 * 110.48745 * 156.61801 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5051 -4.9070 -0.0011 12 1 0.5770 -4.8291 0.5650 13 6 1.2054 -5.3450 -1.4496 14 6 1.4046 -6.8810 -1.4309 15 6 2.6214 -7.0565 -0.4887 16 6 2.4054 -5.9952 0.6098 17 9 3.6333 -5.4433 0.9904 18 9 1.7749 -6.5729 1.7170 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 2.8403 -3.5487 -0.7820 23 1 0.1788 -5.0967 -1.7186 24 1 1.9043 -4.8762 -2.1423 25 1 0.5252 -7.3796 -1.0230 26 1 1.6325 -7.2532 -2.4297 27 1 3.5505 -6.8658 -1.0260 28 1 2.6280 -8.0570 -0.0565 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307007821.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:06 Heat of formation + Delta-G solvation = -112.301701 kcal Electronic energy + Delta-G solvation = -13694.067022 eV Core-core repulsion = 10994.015146 eV Total energy + Delta-G solvation = -2700.051876 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.37166 -46.43672 -37.66067 -34.12207 -32.14169 -28.08229 -27.51193 -25.14844 -21.76278 -21.10308 -20.14580 -17.18844 -16.96754 -15.98574 -15.54784 -14.68419 -14.31319 -14.08825 -13.81497 -13.37542 -12.86189 -12.79578 -12.42977 -12.15123 -11.63580 -11.41203 -11.28617 -11.15294 -10.85125 -10.68083 -10.67354 -10.29767 -9.90194 -9.19586 -8.52187 -7.40406 -6.06179 -4.08147 3.30475 3.37808 3.43462 4.04980 4.28522 4.42236 4.46875 4.65986 5.08496 5.29913 5.32636 5.36989 5.48232 5.52050 5.71912 5.73947 5.91142 6.13559 6.19950 6.33441 7.13538 7.33601 7.72667 8.05258 8.28120 8.50744 9.00830 9.56949 11.04995 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.054570 B = 0.008005 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.980950 B = 3496.796788 C = 3658.778960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.064 0.936 9 C 0.196 3.804 10 N -0.674 5.674 11 C 0.045 3.955 12 H 0.099 0.901 13 C -0.149 4.149 14 C -0.120 4.120 15 C -0.162 4.162 16 C 0.286 3.714 17 F -0.185 7.185 18 F -0.205 7.205 19 H 0.261 0.739 20 H -0.009 1.009 21 H 0.029 0.971 22 H 0.336 0.664 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -12.771 -3.249 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.303 5.303 11 C -0.068 4.068 12 H 0.117 0.883 13 C -0.188 4.188 14 C -0.158 4.158 15 C -0.200 4.200 16 C 0.249 3.751 17 F -0.166 7.166 18 F -0.186 7.186 19 H 0.071 0.929 20 H 0.009 0.991 21 H 0.047 0.953 22 H 0.154 0.846 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.619 -12.595 -2.504 13.106 hybrid contribution 0.063 0.898 -0.669 1.121 sum 2.682 -11.697 -3.173 12.413 Atomic orbital electron populations 1.69970 1.06104 1.26772 1.50887 1.24986 0.94889 0.99428 0.95230 0.86400 0.80102 0.83172 0.77507 1.19591 1.21081 1.20952 1.21207 0.93666 0.90076 1.50406 0.91763 1.19622 0.90429 0.87002 0.95990 1.60541 1.20474 0.99894 1.49410 1.23062 0.96724 0.91402 0.95586 0.88321 1.23116 1.03147 0.95326 0.97250 1.22417 0.97228 0.96762 0.99405 1.23344 1.01268 0.98762 0.96646 1.21871 0.79518 0.91301 0.82389 1.93000 1.44353 1.86823 1.92423 1.92964 1.82624 1.85698 1.57361 0.92913 0.99134 0.95301 0.84595 0.90408 0.90554 0.90742 0.90507 0.88675 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 7 C -0.51 -14.68 9.32 -34.44 -0.32 -15.00 15 8 H 0.06 1.81 7.81 -52.49 -0.41 1.40 15 9 C 0.20 5.11 5.27 -4.98 -0.03 5.09 15 10 N -0.67 -14.66 5.43 -106.81 -0.58 -15.24 15 11 C 0.05 0.81 3.08 -66.60 -0.21 0.60 15 12 H 0.10 1.87 7.69 -51.93 -0.40 1.47 15 13 C -0.15 -2.12 6.45 -25.08 -0.16 -2.28 15 14 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 15 15 C -0.16 -1.96 6.40 -25.07 -0.16 -2.12 15 16 C 0.29 4.75 2.57 -25.61 -0.07 4.68 15 17 F -0.19 -3.52 16.18 2.25 0.04 -3.48 15 18 F -0.21 -3.58 17.04 2.25 0.04 -3.55 15 19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 20 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 15 21 H 0.03 0.82 8.07 -51.93 -0.42 0.40 15 22 H 0.34 6.91 8.09 -39.29 -0.32 6.59 15 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.08 1.08 7.56 -51.93 -0.39 0.69 15 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.09 1.06 8.12 -51.93 -0.42 0.64 15 28 H 0.09 0.92 8.11 -51.93 -0.42 0.49 15 LS Contribution 244.57 15.07 3.69 3.69 Total: -1.00 -30.49 244.57 -5.92 -36.41 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -3.61 Total: 0.50 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.21 Total: -9.03 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.16 Total: -41.30 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 0.07 Total: -7.03 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.49 -5.92 -36.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307007821.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.887 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds