Wall clock time and date at job start Mon Mar 30 2020 02:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00490 * 2 1 4 4 H 1.48490 * 109.47532 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47167 * 300.00586 * 3 2 1 6 6 H 1.48506 * 109.46785 * 60.00178 * 3 2 1 7 7 C 1.37884 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99835 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00075 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.05479 * 326.40911 * 11 10 9 13 13 C 1.54261 * 110.03630 * 87.83082 * 11 10 9 14 14 C 1.54888 * 104.19672 * 142.89148 * 13 11 10 15 15 C 1.54891 * 102.75120 * 322.06034 * 14 13 11 16 16 C 1.53876 * 110.03033 * 205.00031 * 11 10 9 17 17 F 1.39903 * 110.03215 * 359.97438 * 16 11 10 18 18 F 1.39898 * 110.03577 * 121.42643 * 16 11 10 19 19 H 0.97005 * 119.99548 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47322 * 60.00164 * 9 7 2 21 21 H 1.09001 * 109.47332 * 300.00127 * 9 7 2 22 22 H 1.00900 * 110.99276 * 303.95141 * 10 9 7 23 23 H 1.09000 * 110.48928 * 261.57157 * 13 11 10 24 24 H 1.09001 * 110.48691 * 24.08184 * 13 11 10 25 25 H 1.09005 * 110.75648 * 80.37263 * 14 13 11 26 26 H 1.08999 * 110.75852 * 203.74195 * 14 13 11 27 27 H 1.09004 * 110.48613 * 279.26383 * 15 14 13 28 28 H 1.08994 * 110.48745 * 156.61801 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5051 -4.9070 -0.0011 12 1 0.5770 -4.8291 0.5650 13 6 1.2054 -5.3450 -1.4496 14 6 1.4046 -6.8810 -1.4309 15 6 2.6214 -7.0565 -0.4887 16 6 2.4054 -5.9952 0.6098 17 9 3.6333 -5.4433 0.9904 18 9 1.7749 -6.5729 1.7170 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 2.8403 -3.5487 -0.7820 23 1 0.1788 -5.0967 -1.7186 24 1 1.9043 -4.8762 -2.1423 25 1 0.5252 -7.3796 -1.0230 26 1 1.6325 -7.2532 -2.4297 27 1 3.5505 -6.8658 -1.0260 28 1 2.6280 -8.0570 -0.0565 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307007821.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:06 Heat of formation + Delta-G solvation = -132.484357 kcal Electronic energy + Delta-G solvation = -13694.942208 eV Core-core repulsion = 10994.015146 eV Total energy + Delta-G solvation = -2700.927062 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.75044 -47.84293 -39.01218 -35.88868 -34.09265 -29.73217 -28.75634 -26.92760 -23.79202 -22.17519 -21.53107 -18.88800 -18.47597 -17.64313 -16.94321 -16.58131 -15.69952 -15.61123 -15.18631 -14.82581 -14.43563 -14.22952 -14.19226 -13.59819 -13.37063 -12.98993 -12.74153 -12.69198 -12.38598 -12.18912 -12.04062 -11.72856 -11.66658 -11.20234 -10.69965 -9.19021 -8.25719 -6.37022 1.40197 1.41430 1.55399 2.37974 2.80942 3.04737 3.08173 3.21515 3.42671 3.80475 4.15534 4.21104 4.24919 4.38368 4.52613 4.79925 4.92277 5.00139 5.05561 5.07086 5.20756 5.25637 5.57368 5.95293 6.33021 6.61272 6.82957 7.33963 8.86051 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.054570 B = 0.008005 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.980950 B = 3496.796788 C = 3658.778960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.214 3.786 10 N -0.680 5.680 11 C 0.034 3.966 12 H 0.077 0.923 13 C -0.144 4.144 14 C -0.107 4.107 15 C -0.149 4.149 16 C 0.277 3.723 17 F -0.203 7.203 18 F -0.213 7.213 19 H 0.266 0.734 20 H -0.025 1.025 21 H -0.005 1.005 22 H 0.343 0.657 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 -13.523 -4.290 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.086 3.914 10 N -0.311 5.311 11 C -0.078 4.078 12 H 0.096 0.904 13 C -0.183 4.183 14 C -0.145 4.145 15 C -0.187 4.187 16 C 0.240 3.760 17 F -0.183 7.183 18 F -0.195 7.195 19 H 0.075 0.925 20 H -0.008 1.008 21 H 0.013 0.987 22 H 0.162 0.838 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.595 -13.378 -3.551 14.301 hybrid contribution -0.281 1.102 -0.302 1.177 sum 3.314 -12.276 -3.853 13.286 Atomic orbital electron populations 1.70087 1.07768 1.28060 1.51361 1.25940 0.95804 1.03365 0.94409 0.85256 0.78864 0.78161 0.77834 1.18787 1.19947 1.20490 1.21553 0.93821 0.91411 1.50885 0.91877 1.19206 0.90374 0.88292 0.93489 1.60356 1.20133 1.00488 1.50116 1.23216 0.96060 0.90239 0.98304 0.90446 1.23028 1.02971 0.98180 0.94160 1.22435 0.97213 0.93771 1.01045 1.23368 1.02375 0.98006 0.94929 1.22296 0.78334 0.92189 0.83199 1.92962 1.45302 1.87371 1.92714 1.92946 1.82775 1.85655 1.58086 0.92503 1.00776 0.98728 0.83815 0.90755 0.90289 0.89767 0.87225 0.87221 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.21 15 2 C 0.00 0.19 5.46 84.66 0.46 0.65 15 3 Si 0.97 44.65 29.54 68.60 2.03 46.68 15 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 15 5 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 7 C -0.54 -31.21 9.32 25.60 0.24 -30.98 15 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 15 9 C 0.21 11.59 5.27 85.55 0.45 12.04 15 10 N -0.68 -30.25 5.43 -491.84 -2.67 -32.92 15 11 C 0.03 1.23 3.08 45.64 0.14 1.37 15 12 H 0.08 3.07 7.69 -2.39 -0.02 3.05 15 13 C -0.14 -3.92 6.45 31.67 0.20 -3.72 15 14 C -0.11 -2.00 6.91 31.89 0.22 -1.78 15 15 C -0.15 -3.13 6.40 31.67 0.20 -2.92 15 16 C 0.28 8.90 2.57 31.32 0.08 8.98 15 17 F -0.20 -7.60 16.18 44.97 0.73 -6.87 15 18 F -0.21 -7.34 17.04 44.97 0.77 -6.57 15 19 H 0.27 15.03 8.31 -92.70 -0.77 14.26 15 20 H -0.03 -1.43 8.14 -2.38 -0.02 -1.45 15 21 H -0.01 -0.32 8.07 -2.39 -0.02 -0.34 15 22 H 0.34 14.21 8.09 -89.69 -0.73 13.48 15 23 H 0.07 2.06 8.14 -2.39 -0.02 2.05 15 24 H 0.08 2.12 7.56 -2.39 -0.02 2.10 15 25 H 0.08 1.46 8.14 -2.38 -0.02 1.44 15 26 H 0.11 1.45 8.14 -2.39 -0.02 1.43 15 27 H 0.11 2.04 8.12 -2.38 -0.02 2.02 15 28 H 0.11 1.87 8.11 -2.39 -0.02 1.85 15 Total: -1.00 -66.48 244.57 3.56 -62.91 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.43 Total: 9.33 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 2.00 Total: -16.35 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -2.38 Total: -89.13 kcal Atomic # 9 Polarization: -14.94 SS G_CDS: 1.49 Total: -13.44 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -66.48 3.56 -62.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307007821.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.572 kcal (2) G-P(sol) polarization free energy of solvation -66.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds