Wall clock time and date at job start Mon Mar 30 2020 02:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47280 * 2 1 4 4 C 1.38308 * 119.96108 * 264.99690 * 3 2 1 5 5 C 1.38264 * 120.14744 * 180.02562 * 4 3 2 6 6 C 1.38124 * 120.07654 * 359.95065 * 5 4 3 7 7 C 1.38891 * 119.92625 * 0.28058 * 6 5 4 8 8 N 1.39669 * 120.07883 * 179.74389 * 7 6 5 9 9 C 1.38076 * 119.96133 * 84.97639 * 3 2 1 10 10 C 1.50704 * 120.04095 * 0.02562 * 9 3 2 11 11 C 1.50699 * 109.46739 * 90.00339 * 10 9 3 12 12 H 1.08006 * 120.00305 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00117 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99924 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00399 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47049 * 59.99964 * 15 13 11 17 17 H 1.48500 * 109.47303 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46812 * 300.00205 * 15 13 11 19 19 H 1.08999 * 109.46871 * 60.00231 * 1 2 3 20 20 H 1.08997 * 109.47647 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47490 * 300.00585 * 1 2 3 22 22 H 1.08993 * 109.47155 * 239.99325 * 2 1 3 23 23 H 1.09010 * 109.46440 * 119.99941 * 2 1 3 24 24 H 1.07999 * 119.92220 * 359.97438 * 4 3 2 25 25 H 1.07999 * 119.96020 * 179.97438 * 5 4 3 26 26 H 1.08002 * 120.03429 * 179.97438 * 6 5 4 27 27 H 0.97008 * 119.99486 * 359.97438 * 8 7 6 28 28 H 0.96995 * 120.00716 * 180.02562 * 8 7 6 29 29 H 1.08998 * 109.47277 * 209.99872 * 10 9 3 30 30 H 1.08991 * 109.47319 * 330.00638 * 10 9 3 31 31 H 0.97000 * 120.00002 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0372 -1.1937 5 6 2.8230 3.3404 -1.1981 6 6 2.9565 4.0315 -0.0097 7 6 2.6318 3.4140 1.1912 8 7 2.7706 4.1081 2.3953 9 6 2.1635 2.1058 1.1916 10 6 1.8051 1.4334 2.4918 11 6 3.0203 0.7380 3.0493 12 1 3.9585 0.7793 2.5157 13 6 2.9346 0.0491 4.2405 14 7 1.7925 -0.0007 4.8906 15 14 4.4408 -0.8134 4.9312 16 1 5.5159 0.1828 5.1695 17 1 4.0874 -1.4770 6.2119 18 1 4.9161 -1.8322 3.9610 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8901 24 1 2.2577 1.4990 -2.1243 25 1 3.0792 3.8186 -2.1319 26 1 3.3176 5.0494 -0.0139 27 1 3.0945 5.0225 2.3934 28 1 2.5439 3.6757 3.2334 29 1 1.4561 2.1814 3.2037 30 1 1.0162 0.7019 2.3172 31 1 1.7320 -0.4857 5.7285 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307022140.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:20 Heat of formation + Delta-G solvation = -16.556646 kcal Electronic energy + Delta-G solvation = -13207.263816 eV Core-core repulsion = 11065.593287 eV Total energy + Delta-G solvation = -2141.670529 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.47547 -35.95465 -35.50662 -33.95078 -31.68067 -29.26510 -28.42995 -25.37597 -24.28174 -21.83057 -21.22131 -18.43151 -17.80106 -17.31223 -16.67137 -15.98585 -15.43506 -14.93251 -14.48507 -14.08161 -14.02212 -13.79380 -13.27639 -13.02129 -12.88347 -12.63034 -12.53584 -12.28958 -11.77343 -11.58811 -11.45318 -11.15439 -11.00970 -10.52967 -9.20293 -8.26496 -8.00111 -6.24838 0.77871 0.98161 1.39255 1.40270 1.48584 2.41749 3.15668 3.19448 3.30658 4.10492 4.23322 4.45259 4.49933 4.61519 4.70630 4.86320 4.91181 5.06792 5.16151 5.26214 5.35544 5.39909 5.51504 5.61122 5.72818 5.83609 5.90903 6.19442 6.25563 6.35897 6.83205 6.86739 7.22037 7.42379 8.93564 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.030151 B = 0.011530 C = 0.009759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.450814 B = 2427.890889 C = 2868.330865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 C -0.055 4.055 4 C -0.187 4.187 5 C -0.088 4.088 6 C -0.216 4.216 7 C 0.198 3.802 8 N -0.873 5.873 9 C -0.152 4.152 10 C 0.072 3.928 11 C -0.511 4.511 12 H 0.042 0.958 13 C 0.010 3.990 14 N -0.926 5.926 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.272 1.272 19 H 0.066 0.934 20 H 0.064 0.936 21 H 0.033 0.967 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.133 0.867 25 H 0.146 0.854 26 H 0.134 0.866 27 H 0.401 0.599 28 H 0.397 0.603 29 H -0.003 1.003 30 H 0.012 0.988 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 4.986 -9.601 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.122 4.122 3 C -0.056 4.056 4 C -0.207 4.207 5 C -0.107 4.107 6 C -0.239 4.239 7 C 0.093 3.907 8 N -0.413 5.413 9 C -0.157 4.157 10 C 0.035 3.965 11 C -0.549 4.549 12 H 0.061 0.939 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.778 3.222 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 H 0.085 0.915 20 H 0.083 0.917 21 H 0.052 0.948 22 H 0.100 0.900 23 H 0.071 0.929 24 H 0.151 0.849 25 H 0.164 0.836 26 H 0.152 0.848 27 H 0.230 0.770 28 H 0.226 0.774 29 H 0.015 0.985 30 H 0.030 0.970 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.852 4.904 -9.463 10.692 hybrid contribution 0.650 -0.348 1.266 1.466 sum 1.502 4.556 -8.197 9.497 Atomic orbital electron populations 1.21629 0.94417 1.01773 1.01247 1.20499 0.96604 0.93000 1.02096 1.19717 0.97532 0.95898 0.92467 1.20947 1.06427 0.96456 0.96908 1.21035 0.97755 0.94122 0.97747 1.20739 1.10711 1.01376 0.91079 1.17918 0.94183 0.91080 0.87550 1.42524 1.76068 1.16784 1.05930 1.19880 1.05527 0.93769 0.96477 1.17854 0.95651 0.93829 0.89173 1.21242 0.96133 1.31919 1.05634 0.93943 1.25753 0.98557 0.97217 0.97281 1.70058 1.26338 1.43533 1.16747 0.85690 0.79953 0.78906 0.77624 1.19721 1.20756 1.19748 0.91486 0.91658 0.94824 0.90035 0.92923 0.84918 0.83620 0.84771 0.76968 0.77365 0.98476 0.96983 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.70 71.98 0.70 -3.83 16 2 C -0.08 -3.21 5.37 29.85 0.16 -3.05 16 3 C -0.06 -2.22 5.13 -19.89 -0.10 -2.33 16 4 C -0.19 -6.23 9.68 22.29 0.22 -6.01 16 5 C -0.09 -2.67 10.04 22.25 0.22 -2.45 16 6 C -0.22 -7.13 9.90 22.40 0.22 -6.90 16 7 C 0.20 7.88 6.74 38.22 0.26 8.14 16 8 N -0.87 -31.57 8.99 -51.37 -0.46 -32.03 16 9 C -0.15 -6.88 5.09 -19.73 -0.10 -6.98 16 10 C 0.07 3.79 3.98 29.10 0.12 3.91 16 11 C -0.51 -28.84 8.68 25.60 0.22 -28.62 16 12 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 13 C 0.01 0.56 5.46 84.65 0.46 1.03 16 14 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 15 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 20 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.03 1.30 6.91 -2.38 -0.02 1.28 16 22 H 0.08 2.59 8.05 -2.39 -0.02 2.58 16 23 H 0.05 2.39 6.64 -2.38 -0.02 2.37 16 24 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 25 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 26 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.40 11.29 8.84 -92.70 -0.82 10.47 16 28 H 0.40 16.08 6.84 -92.71 -0.63 15.45 16 29 H 0.00 -0.16 6.57 -2.39 -0.02 -0.18 16 30 H 0.01 0.67 5.42 -2.39 -0.01 0.66 16 31 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -63.37 258.65 3.91 -59.46 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -0.32 Total: 27.80 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 2.37 Total: -47.09 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -0.18 Total: -86.68 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.37 3.91 -59.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307022140.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.903 kcal (2) G-P(sol) polarization free energy of solvation -63.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds