Wall clock time and date at job start Mon Mar 30 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46801 * 2 1 4 4 C 1.38309 * 119.92207 * 265.24798 * 3 2 1 5 5 C 1.38081 * 120.07609 * 180.29855 * 4 3 2 6 6 C 1.38935 * 119.92226 * 359.72626 * 5 4 3 7 7 N 1.39670 * 120.07528 * 179.97438 * 6 5 4 8 8 C 1.38891 * 119.85158 * 359.97438 * 6 5 4 9 9 C 1.38128 * 119.92543 * 0.02562 * 8 6 5 10 10 C 1.50698 * 119.96554 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.46993 * 265.00211 * 10 9 8 12 12 H 1.07991 * 120.00449 * 359.72131 * 11 10 9 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 H 1.09001 * 109.46737 * 60.00512 * 1 2 3 20 20 H 1.08994 * 109.46894 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47358 * 300.00493 * 1 2 3 22 22 H 1.08993 * 109.47358 * 239.99507 * 2 1 3 23 23 H 1.09001 * 109.46737 * 119.99488 * 2 1 3 24 24 H 1.08005 * 119.96156 * 0.02562 * 4 3 2 25 25 H 1.08002 * 120.03873 * 179.70535 * 5 4 3 26 26 H 0.96996 * 120.00353 * 180.02562 * 7 6 5 27 27 H 0.97005 * 119.99785 * 0.02562 * 7 6 5 28 28 H 1.08001 * 120.03853 * 180.02562 * 8 6 5 29 29 H 1.08998 * 109.47083 * 144.99627 * 10 9 8 30 30 H 1.09001 * 109.46875 * 24.99890 * 10 9 8 31 31 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3559 2.0382 -1.1946 5 6 2.8222 3.3379 -1.1978 6 6 2.9609 4.0274 0.0004 7 7 3.4328 5.3420 0.0009 8 6 2.6291 3.4066 1.1977 9 6 2.1632 2.1062 1.1937 10 6 1.8036 1.4315 2.4923 11 6 2.9800 0.6280 2.9835 12 1 3.8949 0.6043 2.4103 13 6 2.8865 -0.0811 4.1623 14 7 1.7725 -0.0518 4.8607 15 14 4.3422 -1.0832 4.7674 16 1 5.5066 -0.1864 4.9796 17 1 3.9881 -1.7470 6.0478 18 1 4.6887 -2.1135 3.7555 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.2478 1.5016 -2.1257 25 1 3.0792 3.8178 -2.1306 26 1 3.5295 5.8223 0.8381 27 1 3.6638 5.7747 -0.8360 28 1 2.7353 3.9399 2.1308 29 1 0.9520 0.7697 2.3342 30 1 1.5440 2.1866 3.2343 31 1 1.7069 -0.5504 5.6902 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307117563.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:22 Heat of formation + Delta-G solvation = -1.307146 kcal Electronic energy + Delta-G solvation = -13009.465526 eV Core-core repulsion = 10868.456265 eV Total energy + Delta-G solvation = -2141.009261 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.93450 -35.16146 -33.06099 -31.74221 -30.97829 -27.57275 -26.67322 -23.43081 -22.54316 -20.92780 -19.49780 -16.45880 -16.30380 -15.87126 -14.76738 -14.40090 -14.23751 -13.13775 -12.89215 -12.60957 -12.36245 -12.19563 -11.88262 -11.39100 -11.16653 -10.95923 -10.61325 -10.47871 -10.16320 -9.94169 -9.75581 -9.33139 -9.25729 -8.36135 -7.80730 -6.79086 -5.99191 -4.01856 2.25399 2.38988 3.34686 3.38633 3.42331 4.32520 4.44840 4.69418 5.34725 5.53234 5.69901 5.76284 5.89341 6.15937 6.22617 6.30896 6.32792 6.54191 6.59286 6.80110 6.91994 7.00269 7.11635 7.22800 7.43400 7.61023 7.69719 7.97243 8.01373 8.09577 8.18615 8.40035 9.03333 9.60833 11.10466 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.030217 B = 0.010382 C = 0.008779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.402346 B = 2696.323074 C = 3188.622103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.080 4.080 3 C -0.136 4.136 4 C -0.079 4.079 5 C -0.223 4.223 6 C 0.201 3.799 7 N -0.888 5.888 8 C -0.198 4.198 9 C 0.011 3.989 10 C 0.045 3.955 11 C -0.505 4.505 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 H 0.042 0.958 20 H 0.047 0.953 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.393 0.607 27 H 0.390 0.610 28 H 0.113 0.887 29 H 0.038 0.962 30 H 0.023 0.977 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 5.286 -9.409 10.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.137 4.137 4 C -0.097 4.097 5 C -0.246 4.246 6 C 0.099 3.901 7 N -0.428 5.428 8 C -0.220 4.220 9 C 0.010 3.990 10 C 0.009 3.991 11 C -0.543 4.543 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 H 0.061 0.939 20 H 0.066 0.934 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.126 0.874 25 H 0.123 0.877 26 H 0.220 0.780 27 H 0.216 0.784 28 H 0.131 0.869 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.391 5.148 -9.240 10.584 hybrid contribution 1.010 -0.085 0.375 1.081 sum 1.401 5.063 -8.865 10.304 Atomic orbital electron populations 1.21722 0.96127 1.00603 1.01405 1.20431 0.95111 0.93433 1.02712 1.19527 1.05160 0.96700 0.92345 1.20640 0.98114 0.93984 0.97007 1.20245 1.12406 0.96478 0.95431 1.17763 0.93565 0.84730 0.94073 1.42358 1.76964 1.13007 1.10453 1.20509 1.09288 0.96697 0.95506 1.20292 0.90471 0.91729 0.96519 1.18416 0.97469 0.95368 0.87886 1.20976 0.98772 1.28347 1.06227 0.92602 1.24990 0.95866 0.96760 0.96662 1.69950 1.25750 1.42289 1.15357 0.86647 0.82912 0.80413 0.78010 1.20286 1.21316 1.20162 0.93914 0.93439 0.92163 0.93090 0.88945 0.87397 0.87699 0.77971 0.78358 0.86910 0.94442 0.95842 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.72 37.16 0.36 -2.09 16 2 C -0.08 -1.53 5.38 -27.88 -0.15 -1.68 16 3 C -0.14 -2.76 5.14 -104.59 -0.54 -3.30 16 4 C -0.08 -1.41 9.67 -39.61 -0.38 -1.79 16 5 C -0.22 -3.79 9.90 -39.38 -0.39 -4.18 16 6 C 0.20 3.54 6.75 -83.79 -0.57 2.97 16 7 N -0.89 -11.84 9.09 32.41 0.29 -11.55 16 8 C -0.20 -4.06 9.53 -39.38 -0.38 -4.43 16 9 C 0.01 0.24 5.07 -104.65 -0.53 -0.29 16 10 C 0.05 1.17 4.43 -29.04 -0.13 1.04 16 11 C -0.50 -14.11 8.27 -34.44 -0.28 -14.40 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.06 1.14 6.79 -51.93 -0.35 0.79 16 22 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 23 H 0.09 2.05 6.39 -51.93 -0.33 1.72 16 24 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 25 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 26 H 0.39 4.68 8.84 -40.82 -0.36 4.32 16 27 H 0.39 4.18 8.84 -40.82 -0.36 3.82 16 28 H 0.11 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.04 1.00 5.62 -51.93 -0.29 0.71 16 30 H 0.02 0.64 8.05 -51.93 -0.42 0.22 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 261.63 15.07 3.94 3.94 Total: -1.00 -29.93 261.63 -7.32 -37.25 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.19 Total: 5.93 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -3.08 Total: -26.60 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 1.03 Total: -37.14 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.93 -7.32 -37.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307117563.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.938 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds