Wall clock time and date at job start Mon Mar 30 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46801 * 2 1 4 4 C 1.38309 * 119.92207 * 265.24798 * 3 2 1 5 5 C 1.38081 * 120.07609 * 180.29855 * 4 3 2 6 6 C 1.38935 * 119.92226 * 359.72626 * 5 4 3 7 7 N 1.39670 * 120.07528 * 179.97438 * 6 5 4 8 8 C 1.38891 * 119.85158 * 359.97438 * 6 5 4 9 9 C 1.38128 * 119.92543 * 0.02562 * 8 6 5 10 10 C 1.50698 * 119.96554 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.46993 * 265.00211 * 10 9 8 12 12 H 1.07991 * 120.00449 * 359.72131 * 11 10 9 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 H 1.09001 * 109.46737 * 60.00512 * 1 2 3 20 20 H 1.08994 * 109.46894 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47358 * 300.00493 * 1 2 3 22 22 H 1.08993 * 109.47358 * 239.99507 * 2 1 3 23 23 H 1.09001 * 109.46737 * 119.99488 * 2 1 3 24 24 H 1.08005 * 119.96156 * 0.02562 * 4 3 2 25 25 H 1.08002 * 120.03873 * 179.70535 * 5 4 3 26 26 H 0.96996 * 120.00353 * 180.02562 * 7 6 5 27 27 H 0.97005 * 119.99785 * 0.02562 * 7 6 5 28 28 H 1.08001 * 120.03853 * 180.02562 * 8 6 5 29 29 H 1.08998 * 109.47083 * 144.99627 * 10 9 8 30 30 H 1.09001 * 109.46875 * 24.99890 * 10 9 8 31 31 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3559 2.0382 -1.1946 5 6 2.8222 3.3379 -1.1978 6 6 2.9609 4.0274 0.0004 7 7 3.4328 5.3420 0.0009 8 6 2.6291 3.4066 1.1977 9 6 2.1632 2.1062 1.1937 10 6 1.8036 1.4315 2.4923 11 6 2.9800 0.6280 2.9835 12 1 3.8949 0.6043 2.4103 13 6 2.8865 -0.0811 4.1623 14 7 1.7725 -0.0518 4.8607 15 14 4.3422 -1.0832 4.7674 16 1 5.5066 -0.1864 4.9796 17 1 3.9881 -1.7470 6.0478 18 1 4.6887 -2.1135 3.7555 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.2478 1.5016 -2.1257 25 1 3.0792 3.8178 -2.1306 26 1 3.5295 5.8223 0.8381 27 1 3.6638 5.7747 -0.8360 28 1 2.7353 3.9399 2.1308 29 1 0.9520 0.7697 2.3342 30 1 1.5440 2.1866 3.2343 31 1 1.7069 -0.5504 5.6902 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307117563.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:22 Heat of formation + Delta-G solvation = -19.645527 kcal Electronic energy + Delta-G solvation = -13010.260738 eV Core-core repulsion = 10868.456265 eV Total energy + Delta-G solvation = -2141.804473 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.41846 -36.61619 -35.05108 -33.12461 -32.72553 -29.27295 -28.27285 -25.36772 -23.99099 -22.54357 -20.99270 -18.47327 -17.72211 -17.37115 -16.42645 -16.16524 -15.69336 -14.69040 -14.47349 -14.19151 -13.97691 -13.82744 -13.47824 -13.12080 -12.85610 -12.74521 -12.49782 -12.25503 -11.76738 -11.61971 -11.48752 -11.09252 -10.85994 -10.54820 -9.40850 -8.21662 -8.08301 -6.27278 0.76115 0.90701 1.39665 1.42021 1.50241 2.41861 3.13374 3.16055 3.18439 4.14548 4.25737 4.33253 4.45387 4.67965 4.75169 4.87934 4.89559 5.06976 5.16071 5.31700 5.33932 5.40804 5.49859 5.57316 5.67250 5.75868 5.88151 6.16928 6.29545 6.31689 6.75850 6.84659 7.15803 7.39487 8.93138 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.030217 B = 0.010382 C = 0.008779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.402346 B = 2696.323074 C = 3188.622103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 C -0.155 4.155 4 C -0.072 4.072 5 C -0.216 4.216 6 C 0.208 3.792 7 N -0.870 5.870 8 C -0.222 4.222 9 C -0.021 4.021 10 C 0.058 3.942 11 C -0.516 4.516 12 H 0.049 0.951 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.960 3.040 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.267 1.267 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.030 0.970 22 H 0.078 0.922 23 H 0.051 0.949 24 H 0.142 0.858 25 H 0.144 0.856 26 H 0.401 0.599 27 H 0.407 0.593 28 H 0.101 0.899 29 H 0.018 0.982 30 H -0.011 1.011 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.730 5.723 -11.815 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.157 4.157 4 C -0.090 4.090 5 C -0.238 4.238 6 C 0.103 3.897 7 N -0.411 5.411 8 C -0.245 4.245 9 C -0.022 4.022 10 C 0.021 3.979 11 C -0.554 4.554 12 H 0.067 0.933 13 C -0.192 4.192 14 N -0.570 5.570 15 Si 0.784 3.216 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.192 1.192 19 H 0.084 0.916 20 H 0.080 0.920 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.070 0.930 24 H 0.160 0.840 25 H 0.162 0.838 26 H 0.229 0.771 27 H 0.237 0.763 28 H 0.119 0.881 29 H 0.036 0.964 30 H 0.008 0.992 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.635 5.627 -11.663 13.053 hybrid contribution 0.621 -0.116 1.054 1.229 sum 2.256 5.511 -10.609 12.166 Atomic orbital electron populations 1.21661 0.95034 1.01467 1.01058 1.20378 0.96132 0.93018 1.01937 1.19663 1.06263 0.97184 0.92616 1.20982 0.96502 0.94484 0.97072 1.20692 1.10555 0.96107 0.96462 1.17786 0.92520 0.86145 0.93231 1.42291 1.75457 1.11428 1.11969 1.20479 1.10897 0.96433 0.96643 1.20057 0.93438 0.93011 0.95684 1.18123 0.96335 0.94078 0.89363 1.21219 0.99064 1.28674 1.06448 0.93277 1.25858 0.98704 0.97860 0.96797 1.70077 1.27811 1.43256 1.15810 0.85585 0.79379 0.78932 0.77694 1.19602 1.20575 1.19200 0.91567 0.91991 0.95043 0.90332 0.93050 0.84006 0.83825 0.77084 0.76285 0.88050 0.96359 0.99229 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 9.72 71.98 0.70 -3.96 16 2 C -0.08 -2.97 5.38 29.85 0.16 -2.81 16 3 C -0.16 -6.26 5.14 -19.84 -0.10 -6.36 16 4 C -0.07 -2.34 9.67 22.25 0.22 -2.13 16 5 C -0.22 -6.47 9.90 22.40 0.22 -6.25 16 6 C 0.21 6.86 6.75 38.22 0.26 7.11 16 7 N -0.87 -20.60 9.09 -51.37 -0.47 -21.06 16 8 C -0.22 -9.23 9.53 22.40 0.21 -9.02 16 9 C -0.02 -0.98 5.07 -19.89 -0.10 -1.09 16 10 C 0.06 3.19 4.43 29.10 0.13 3.32 16 11 C -0.52 -30.09 8.27 25.60 0.21 -29.88 16 12 H 0.05 2.86 7.74 -2.92 -0.02 2.83 16 13 C 0.01 0.33 5.46 84.66 0.46 0.79 16 14 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 15 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 20 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 21 H 0.03 1.24 6.79 -2.39 -0.02 1.22 16 22 H 0.08 2.51 8.05 -2.39 -0.02 2.49 16 23 H 0.05 2.37 6.39 -2.39 -0.02 2.35 16 24 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 25 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 26 H 0.40 8.64 8.84 -92.71 -0.82 7.82 16 27 H 0.41 7.04 8.84 -92.70 -0.82 6.22 16 28 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.02 1.05 5.62 -2.39 -0.01 1.04 16 30 H -0.01 -0.64 8.05 -2.39 -0.02 -0.66 16 31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -66.92 261.63 3.71 -63.21 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.50 Total: 17.46 kcal Atomic # 6 Polarization: -52.62 SS G_CDS: 2.37 Total: -50.25 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -0.18 Total: -77.56 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -66.92 3.71 -63.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307117563.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.562 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds