Wall clock time and date at job start Mon Mar 30 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38250 * 119.99876 * 2 1 4 4 C 1.38214 * 120.00057 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00056 * 359.97438 * 4 3 2 6 6 C 1.38215 * 119.99722 * 359.95969 * 5 4 3 7 7 C 1.50700 * 119.99654 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46769 * 259.99575 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72432 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 C 1.38213 * 120.00171 * 180.20845 * 2 1 3 18 18 C 1.50705 * 120.00177 * 0.02562 * 17 2 1 19 19 H 1.08999 * 109.47121 * 90.00231 * 1 2 3 20 20 H 1.09010 * 109.47187 * 210.00340 * 1 2 3 21 21 H 1.08996 * 109.47560 * 329.99704 * 1 2 3 22 22 H 1.08000 * 120.00118 * 0.02562 * 3 2 1 23 23 H 1.08005 * 120.00281 * 179.97438 * 4 3 2 24 24 H 1.07996 * 119.99994 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.47210 * 139.99932 * 7 6 5 26 26 H 1.08994 * 109.47121 * 19.99902 * 7 6 5 27 27 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 28 28 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.47291 * 270.19261 * 18 17 2 30 30 H 1.09005 * 109.46805 * 30.18664 * 18 17 2 31 31 H 1.09000 * 109.47445 * 150.18623 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3342 -2.5020 0.0014 8 7 4.3697 -3.0459 -1.3584 9 6 5.0100 -4.2310 -1.6053 10 1 5.4849 -4.7668 -0.7967 11 6 5.0487 -4.7435 -2.8947 12 7 4.4703 -4.0901 -3.8802 13 14 5.9214 -6.3603 -3.2314 14 1 6.4849 -6.8919 -1.9645 15 1 4.9538 -7.3381 -3.7909 16 1 7.0190 -6.1367 -4.2065 17 6 2.1981 -1.1969 -0.0044 18 6 1.4446 -2.5021 -0.0097 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3634 0.8899 0.5138 22 1 1.6582 2.1326 0.0004 23 1 4.1204 2.1327 -0.0010 24 1 5.3517 0.0001 -0.0014 25 1 3.8345 -3.2098 0.6629 26 1 5.3523 -2.3335 0.3521 27 1 3.9435 -2.5645 -2.0847 28 1 4.4969 -4.4484 -4.7812 29 1 1.2596 -2.8190 1.0166 30 1 0.4939 -2.3706 -0.5263 31 1 2.0354 -3.2606 -0.5233 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307317961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:32 Heat of formation + Delta-G solvation = 21.166765 kcal Electronic energy + Delta-G solvation = -12902.165550 eV Core-core repulsion = 10762.130831 eV Total energy + Delta-G solvation = -2140.034719 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.34158 -34.86652 -33.00297 -32.30591 -30.09470 -27.51163 -26.02623 -25.18885 -22.63498 -20.41448 -20.07084 -17.14419 -15.68891 -15.50618 -14.69065 -14.19344 -13.88951 -13.17717 -13.10395 -12.63091 -12.50869 -12.39677 -12.10372 -11.94217 -11.41664 -11.31200 -10.94414 -10.82255 -10.46957 -10.32913 -9.95236 -9.74320 -8.87824 -8.20653 -8.11509 -6.90248 -5.74174 -3.03515 1.76120 1.77830 3.44505 3.50032 3.52422 4.10618 4.63760 5.12371 5.16026 5.33327 5.45829 5.55892 5.58809 5.74931 5.76905 5.94274 5.99042 6.08751 6.14241 6.23435 6.32535 6.46511 6.52501 6.69824 6.79214 6.86690 6.99214 7.26999 7.45630 7.71937 8.43740 9.55351 10.12556 10.48820 11.48330 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.048140 B = 0.007869 C = 0.007411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.492835 B = 3557.248444 C = 3777.348124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.127 4.127 4 C -0.130 4.130 5 C -0.110 4.110 6 C -0.077 4.077 7 C 0.187 3.813 8 N -0.725 5.725 9 C -0.240 4.240 10 H 0.072 0.928 11 C -0.014 4.014 12 N -0.931 5.931 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 C -0.066 4.066 18 C -0.124 4.124 19 H 0.067 0.933 20 H 0.066 0.934 21 H 0.059 0.941 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.119 0.881 25 H 0.030 0.970 26 H 0.025 0.975 27 H 0.386 0.614 28 H 0.254 0.746 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 8.483 8.457 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.148 4.148 5 C -0.128 4.128 6 C -0.077 4.077 7 C 0.060 3.940 8 N -0.369 5.369 9 C -0.371 4.371 10 H 0.089 0.911 11 C -0.210 4.210 12 N -0.580 5.580 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.219 1.219 17 C -0.067 4.067 18 C -0.180 4.180 19 H 0.086 0.914 20 H 0.085 0.915 21 H 0.078 0.922 22 H 0.132 0.868 23 H 0.133 0.867 24 H 0.137 0.863 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.219 0.781 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.818 8.308 8.486 13.224 hybrid contribution 0.448 -0.589 -0.584 0.943 sum -5.370 7.719 7.902 12.283 Atomic orbital electron populations 1.20768 0.91771 1.02187 1.02056 1.19720 0.95647 0.92791 1.01529 1.20866 0.94235 0.96965 1.02454 1.21003 0.94221 0.97667 1.01891 1.21062 0.99790 0.91935 1.00033 1.20167 0.93234 0.95991 0.98318 1.19649 0.95717 0.89070 0.89557 1.42365 1.66506 1.24808 1.03233 1.19300 1.27072 0.97411 0.93324 0.91052 1.24753 1.01359 0.99083 0.95761 1.69692 1.48865 1.39509 0.99894 0.86112 0.78893 0.83414 0.77743 1.20547 1.21877 1.21887 1.19687 0.93252 0.94812 0.98914 1.20933 1.00039 0.95377 1.01659 0.91447 0.91487 0.92162 0.86832 0.86682 0.86294 0.95273 0.95715 0.78053 0.93576 0.91984 0.92095 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.19 36.01 0.33 -1.02 16 2 C -0.10 -1.50 5.88 -104.63 -0.62 -2.11 16 3 C -0.13 -1.85 9.70 -39.59 -0.38 -2.23 16 4 C -0.13 -1.95 10.05 -39.58 -0.40 -2.35 16 5 C -0.11 -1.89 9.67 -39.58 -0.38 -2.27 16 6 C -0.08 -1.46 5.25 -104.62 -0.55 -2.01 16 7 C 0.19 4.00 5.51 -5.19 -0.03 3.97 16 8 N -0.72 -18.86 4.91 -61.09 -0.30 -19.16 16 9 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 10 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 12 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 13 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 C -0.07 -1.17 5.88 -104.62 -0.62 -1.78 16 18 C -0.12 -2.08 8.44 36.01 0.30 -1.77 16 19 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 20 H 0.07 0.77 6.72 -51.92 -0.35 0.42 16 21 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 22 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 23 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 24 H 0.12 1.93 8.04 -52.49 -0.42 1.51 16 25 H 0.03 0.62 7.30 -51.93 -0.38 0.24 16 26 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 27 H 0.39 10.77 7.66 -40.82 -0.31 10.46 16 28 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.92 6.72 -51.93 -0.35 0.57 16 31 H 0.09 1.85 6.34 -51.93 -0.33 1.52 16 LS Contribution 261.29 15.07 3.94 3.94 Total: -1.00 -30.64 261.29 -7.46 -38.10 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.21 Total: 6.42 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.58 Total: -19.02 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.42 Total: -47.00 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.64 -7.46 -38.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307317961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.269 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds