Wall clock time and date at job start Mon Mar 30 2020 02:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38250 * 119.99876 * 2 1 4 4 C 1.38214 * 120.00057 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00056 * 359.97438 * 4 3 2 6 6 C 1.38215 * 119.99722 * 359.95969 * 5 4 3 7 7 C 1.50700 * 119.99654 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46769 * 259.99575 * 7 6 5 9 9 C 1.36943 * 119.99752 * 179.72432 * 8 7 6 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 C 1.38213 * 120.00171 * 180.20845 * 2 1 3 18 18 C 1.50705 * 120.00177 * 0.02562 * 17 2 1 19 19 H 1.08999 * 109.47121 * 90.00231 * 1 2 3 20 20 H 1.09010 * 109.47187 * 210.00340 * 1 2 3 21 21 H 1.08996 * 109.47560 * 329.99704 * 1 2 3 22 22 H 1.08000 * 120.00118 * 0.02562 * 3 2 1 23 23 H 1.08005 * 120.00281 * 179.97438 * 4 3 2 24 24 H 1.07996 * 119.99994 * 179.97438 * 5 4 3 25 25 H 1.09004 * 109.47210 * 139.99932 * 7 6 5 26 26 H 1.08994 * 109.47121 * 19.99902 * 7 6 5 27 27 H 0.97001 * 120.00384 * 0.02562 * 8 7 6 28 28 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 29 29 H 1.08997 * 109.47291 * 270.19261 * 18 17 2 30 30 H 1.09005 * 109.46805 * 30.18664 * 18 17 2 31 31 H 1.09000 * 109.47445 * 150.18623 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5806 -1.1970 0.0008 7 6 4.3342 -2.5020 0.0014 8 7 4.3697 -3.0459 -1.3584 9 6 5.0100 -4.2310 -1.6053 10 1 5.4849 -4.7668 -0.7967 11 6 5.0487 -4.7435 -2.8947 12 7 4.4703 -4.0901 -3.8802 13 14 5.9214 -6.3603 -3.2314 14 1 6.4849 -6.8919 -1.9645 15 1 4.9538 -7.3381 -3.7909 16 1 7.0190 -6.1367 -4.2065 17 6 2.1981 -1.1969 -0.0044 18 6 1.4446 -2.5021 -0.0097 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3634 0.8899 0.5138 22 1 1.6582 2.1326 0.0004 23 1 4.1204 2.1327 -0.0010 24 1 5.3517 0.0001 -0.0014 25 1 3.8345 -3.2098 0.6629 26 1 5.3523 -2.3335 0.3521 27 1 3.9435 -2.5645 -2.0847 28 1 4.4969 -4.4484 -4.7812 29 1 1.2596 -2.8190 1.0166 30 1 0.4939 -2.3706 -0.5263 31 1 2.0354 -3.2606 -0.5233 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307317961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:32 Heat of formation + Delta-G solvation = 3.273558 kcal Electronic energy + Delta-G solvation = -12902.941458 eV Core-core repulsion = 10762.130831 eV Total energy + Delta-G solvation = -2140.810627 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.61786 -36.69648 -34.24855 -34.03480 -31.89798 -28.84240 -27.30013 -26.85925 -24.56978 -21.64071 -21.48442 -19.24338 -17.00336 -16.81389 -16.60555 -15.75174 -15.36430 -14.84713 -14.71486 -14.06950 -13.76378 -13.59052 -13.47291 -13.29723 -13.02492 -12.84966 -12.58208 -12.53819 -12.11487 -11.88585 -11.68889 -11.52446 -10.99675 -9.50515 -9.35670 -9.02641 -7.95639 -5.25806 0.48544 0.52860 1.46790 1.47875 1.58260 2.54565 2.86562 3.37194 3.93570 3.97078 4.12897 4.20702 4.24276 4.44641 4.50826 4.66589 4.79980 4.85717 4.88142 4.90885 4.92689 5.06794 5.13439 5.33208 5.47018 5.47724 5.63838 5.73000 5.90477 6.22186 6.24877 7.31385 8.04050 8.30837 9.27834 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.048140 B = 0.007869 C = 0.007411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.492835 B = 3557.248444 C = 3777.348124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.123 4.123 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.105 4.105 7 C 0.191 3.809 8 N -0.733 5.733 9 C -0.247 4.247 10 H 0.077 0.923 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.977 3.023 14 H -0.266 1.266 15 H -0.292 1.292 16 H -0.293 1.293 17 C -0.087 4.087 18 C -0.116 4.116 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.149 0.851 23 H 0.146 0.854 24 H 0.119 0.881 25 H 0.030 0.970 26 H 0.024 0.976 27 H 0.373 0.627 28 H 0.251 0.749 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 9.588 9.289 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.141 4.141 4 C -0.145 4.145 5 C -0.145 4.145 6 C -0.105 4.105 7 C 0.065 3.935 8 N -0.376 5.376 9 C -0.378 4.378 10 H 0.095 0.905 11 C -0.267 4.267 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.190 1.190 15 H -0.219 1.219 16 H -0.220 1.220 17 C -0.087 4.087 18 C -0.173 4.173 19 H 0.090 0.910 20 H 0.090 0.910 21 H 0.104 0.896 22 H 0.167 0.833 23 H 0.164 0.836 24 H 0.137 0.863 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.204 0.796 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.512 9.417 9.368 14.793 hybrid contribution 0.627 -0.836 -0.770 1.298 sum -5.885 8.581 8.598 13.498 Atomic orbital electron populations 1.20832 0.89313 1.03760 1.02764 1.20124 0.97535 0.92198 1.00231 1.21333 0.94220 0.98074 1.00462 1.21363 0.94855 0.97884 1.00407 1.21206 1.00096 0.92410 1.00785 1.20048 0.94017 0.95232 1.01195 1.19657 0.96018 0.90614 0.87177 1.42507 1.66084 1.24319 1.04666 1.19704 1.26383 0.98134 0.93598 0.90521 1.25603 1.02715 1.02733 0.95623 1.69854 1.50700 1.41325 1.00072 0.85027 0.77456 0.79139 0.77832 1.18983 1.21868 1.21984 1.19868 0.92932 0.96045 0.99874 1.20839 0.99906 0.94234 1.02320 0.91009 0.91034 0.89597 0.83286 0.83641 0.86274 0.95260 0.95845 0.79579 0.93984 0.90380 0.90575 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 9.19 71.24 0.65 -1.68 16 2 C -0.10 -2.89 5.88 -19.87 -0.12 -3.00 16 3 C -0.12 -3.17 9.70 22.27 0.22 -2.95 16 4 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 5 C -0.13 -4.29 9.67 22.27 0.22 -4.07 16 6 C -0.10 -4.01 5.25 -19.87 -0.10 -4.11 16 7 C 0.19 8.41 5.51 85.63 0.47 8.88 16 8 N -0.73 -39.32 4.91 -347.18 -1.71 -41.02 16 9 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 10 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 11 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 12 N -0.97 -60.76 13.06 21.65 0.28 -60.47 16 13 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 16 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 17 C -0.09 -3.02 5.88 -19.87 -0.12 -3.13 16 18 C -0.12 -3.91 8.44 71.24 0.60 -3.31 16 19 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 20 H 0.07 1.45 6.72 -2.38 -0.02 1.43 16 21 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 22 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 23 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 24 H 0.12 3.89 8.04 -2.91 -0.02 3.86 16 25 H 0.03 1.28 7.30 -2.38 -0.02 1.26 16 26 H 0.02 1.03 8.00 -2.39 -0.02 1.01 16 27 H 0.37 21.60 7.66 -92.71 -0.71 20.89 16 28 H 0.25 15.18 8.31 -92.71 -0.77 14.40 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 2.24 6.72 -2.38 -0.02 2.23 16 31 H 0.05 2.20 6.34 -2.39 -0.02 2.18 16 Total: -1.00 -66.27 261.29 4.36 -61.91 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.41 Total: 24.59 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 3.35 Total: -33.95 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -1.42 Total: -101.50 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -66.27 4.36 -61.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307317961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.183 kcal (2) G-P(sol) polarization free energy of solvation -66.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds