Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 H 1.08999 * 109.47257 * 305.44314 * 3 2 1 5 5 C 1.50700 * 109.47169 * 185.44574 * 3 2 1 6 6 H 1.08006 * 119.99906 * 245.30922 * 5 3 2 7 7 C 1.37871 * 120.00313 * 65.03112 * 5 3 2 8 8 N 1.31520 * 119.99929 * 7.25084 * 7 5 3 9 9 Si 1.86805 * 120.00381 * 187.25204 * 7 5 3 10 10 H 1.48497 * 109.47223 * 94.16170 * 9 7 5 11 11 H 1.48500 * 109.47298 * 214.16777 * 9 7 5 12 12 H 1.48508 * 109.46678 * 334.16032 * 9 7 5 13 13 N 1.46493 * 109.46990 * 65.44240 * 3 2 1 14 14 C 1.34433 * 125.76922 * 85.00197 * 13 3 2 15 15 C 1.38010 * 107.40475 * 179.97438 * 14 13 3 16 16 C 1.43197 * 126.40448 * 180.02562 * 15 14 13 17 17 N 6.64555 * 96.84929 * 61.39621 * 2 1 3 18 18 C 1.41273 * 107.19244 * 359.97438 * 15 14 13 19 19 N 1.30487 * 108.04982 * 359.75522 * 18 15 14 20 20 H 1.08997 * 109.46885 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47313 * 299.99736 * 1 2 3 22 22 H 1.09002 * 109.47170 * 59.99828 * 1 2 3 23 23 H 1.09004 * 109.46927 * 240.00402 * 2 1 3 24 24 H 1.08989 * 109.47717 * 120.00400 * 2 1 3 25 25 H 0.96999 * 119.99602 * 180.02562 * 8 7 5 26 26 H 1.07998 * 126.29913 * 359.97438 * 14 13 3 27 27 H 1.08003 * 125.97348 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5992 1.9837 -0.8372 5 6 3.5409 1.4447 -0.1348 6 1 4.1554 1.8091 0.6752 7 6 4.1300 0.9762 -1.2900 8 7 3.3850 0.6613 -2.3271 9 14 5.9863 0.7885 -1.3821 10 1 6.3614 -0.6037 -1.0266 11 1 6.4463 1.0882 -2.7619 12 1 6.6270 1.7321 -0.4309 13 7 1.6615 2.0942 1.2562 14 6 2.3481 2.0343 2.4105 15 6 1.6554 2.7807 3.3420 16 6 2.0273 2.9915 4.7087 17 7 2.3225 3.1589 5.7928 18 6 0.5115 3.2989 2.6949 19 7 0.5279 2.8899 1.4559 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8898 25 1 3.7995 0.3313 -3.1396 26 1 3.2717 1.5003 2.5780 27 1 -0.2422 3.9276 3.1456 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307530852.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = 73.913010 kcal Electronic energy + Delta-G solvation = -12705.454369 eV Core-core repulsion = 10464.166555 eV Total energy + Delta-G solvation = -2241.287814 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.11532 -37.52773 -36.80893 -33.95219 -32.15279 -31.23654 -28.80270 -25.55505 -23.68499 -22.71470 -21.19898 -19.36074 -18.47851 -17.05468 -16.19715 -16.07992 -15.51236 -14.73238 -14.60208 -14.40741 -14.16435 -13.80233 -13.54459 -13.36731 -13.04817 -12.88812 -12.61511 -12.14072 -12.08285 -11.70220 -11.66520 -11.20364 -10.61476 -10.31726 -9.41679 -8.28808 -6.43512 0.76121 1.41082 1.45485 1.48345 1.56078 1.75948 1.80508 2.40009 2.72296 3.05233 3.29384 4.02759 4.11389 4.35504 4.44868 4.63606 4.65216 4.83177 4.96631 5.18890 5.23500 5.43393 5.56783 5.61891 5.71119 5.91790 6.15075 6.67680 6.71493 6.91022 7.27841 8.79001 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.031768 B = 0.010504 C = 0.008513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.173824 B = 2664.913804 C = 3288.133838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.286 3.714 4 H 0.037 0.963 5 C -0.560 4.560 6 H 0.075 0.925 7 C 0.034 3.966 8 N -0.906 5.906 9 Si 0.964 3.036 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.267 1.267 13 N -0.325 5.325 14 C 0.138 3.862 15 C -0.226 4.226 16 C 0.329 3.671 17 N -0.490 5.490 18 C 0.095 3.905 19 N -0.331 5.331 20 H 0.060 0.940 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.270 0.730 26 H 0.194 0.806 27 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -0.157 4.356 5.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C 0.187 3.813 4 H 0.054 0.946 5 C -0.598 4.598 6 H 0.093 0.907 7 C -0.169 4.169 8 N -0.543 5.543 9 Si 0.788 3.212 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.192 1.192 13 N -0.099 5.099 14 C -0.020 4.020 15 C -0.243 4.243 16 C 0.015 3.985 17 N -0.169 5.169 18 C -0.093 4.093 19 N -0.150 5.150 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.210 0.790 27 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.702 -0.009 4.490 5.240 hybrid contribution 1.222 -0.201 -0.148 1.247 sum -1.480 -0.210 4.342 4.592 Atomic orbital electron populations 1.21695 0.95964 1.01050 1.00809 1.21767 0.94952 0.96825 1.01916 1.19153 0.95075 0.89818 0.77288 0.94555 1.21510 0.90113 1.45130 1.03071 0.90731 1.25566 1.02810 0.94084 0.94395 1.70034 1.37460 1.43109 1.03690 0.85449 0.79378 0.78869 0.77456 1.19569 1.21168 1.19174 1.49335 1.15702 1.34406 1.10463 1.23165 0.97519 0.96256 0.85052 1.16084 1.03201 1.16775 0.88259 1.24504 0.91666 0.91221 0.91090 1.81219 1.10420 1.12538 1.12695 1.24414 0.96860 0.98158 0.89849 1.77190 1.06387 1.12465 1.18960 0.92120 0.93523 0.94005 0.90743 0.92969 0.92034 0.78955 0.76164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.80 71.98 0.71 -4.23 15 2 C -0.12 -4.75 5.49 30.59 0.17 -4.58 15 3 C 0.29 12.75 2.55 44.25 0.11 12.87 15 4 H 0.04 1.88 8.11 -2.39 -0.02 1.86 15 5 C -0.56 -26.42 8.27 25.60 0.21 -26.21 15 6 H 0.07 3.38 6.58 -2.91 -0.02 3.36 15 7 C 0.03 1.65 5.19 84.65 0.44 2.08 15 8 N -0.91 -46.25 12.02 21.45 0.26 -45.99 15 9 Si 0.96 38.57 29.54 68.60 2.03 40.59 15 10 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 11 H -0.29 -11.52 7.11 99.48 0.71 -10.81 15 12 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 13 N -0.32 -12.64 3.03 -329.22 -1.00 -13.64 15 14 C 0.14 4.68 10.31 84.24 0.87 5.54 15 15 C -0.23 -6.89 5.96 -21.34 -0.13 -7.02 15 16 C 0.33 10.10 15.82 88.33 1.40 11.50 15 17 N -0.49 -16.55 18.54 19.00 0.35 -16.20 15 18 C 0.10 2.77 12.00 85.64 1.03 3.79 15 19 N -0.33 -12.03 11.94 -56.26 -0.67 -12.70 15 20 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.05 1.65 7.24 -2.39 -0.02 1.63 15 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.07 3.40 6.67 -2.38 -0.02 3.39 15 24 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.27 13.14 8.31 -92.71 -0.77 12.37 15 26 H 0.19 5.87 7.45 -2.91 -0.02 5.84 15 27 H 0.22 4.41 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -53.30 248.65 6.95 -46.35 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.18 Total: 7.83 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 4.80 Total: -6.25 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -1.06 Total: -88.53 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.59 kcal Total: -53.30 6.95 -46.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307530852.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.267 kcal (2) G-P(sol) polarization free energy of solvation -53.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds