Wall clock time and date at job start Mon Mar 30 2020 02:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 120.00101 * 2 1 4 4 H 1.08003 * 120.00256 * 158.67582 * 3 2 1 5 5 C 1.38811 * 119.99891 * 338.94159 * 3 2 1 6 6 N 1.31613 * 120.00197 * 348.16204 * 5 3 2 7 7 Si 1.86800 * 120.00118 * 168.15465 * 5 3 2 8 8 H 1.48501 * 109.46959 * 60.00449 * 7 5 3 9 9 H 1.48498 * 109.47297 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47036 * 300.00635 * 7 5 3 11 11 C 1.46504 * 120.00121 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47285 * 270.00338 * 11 2 1 13 13 C 1.53000 * 115.55318 * 34.32487 * 12 11 2 14 14 F 1.39905 * 109.47126 * 325.58849 * 13 12 11 15 15 F 1.39903 * 109.46815 * 85.58270 * 13 12 11 16 16 C 1.53002 * 117.49551 * 248.62213 * 12 11 2 17 17 C 1.52998 * 117.50052 * 180.02562 * 12 11 2 18 18 H 1.08995 * 109.47256 * 84.87655 * 1 2 3 19 19 H 1.08998 * 109.47065 * 204.88380 * 1 2 3 20 20 H 1.08999 * 109.46946 * 324.87371 * 1 2 3 21 21 H 0.96999 * 120.00642 * 179.97438 * 6 5 3 22 22 H 1.09001 * 109.46685 * 29.99768 * 11 2 1 23 23 H 1.08994 * 109.47061 * 149.99845 * 11 2 1 24 24 H 1.08996 * 109.47271 * 205.58518 * 13 12 11 25 25 H 1.08996 * 117.49980 * 359.97438 * 16 12 11 26 26 H 1.09003 * 117.49687 * 145.02312 * 16 12 11 27 27 H 1.08995 * 117.50070 * 214.97749 * 17 12 11 28 28 H 1.09001 * 117.49836 * 359.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1743 1.2179 0.3401 5 6 1.5252 2.3479 -0.4320 6 7 0.3680 2.2804 -1.0554 7 14 2.3270 4.0075 -0.1283 8 1 3.6542 4.0451 -0.7934 9 1 1.4649 5.0825 -0.6817 10 1 2.4991 4.2142 1.3322 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 1.3510 -1.3584 2.4453 14 9 0.7747 -0.1329 2.0940 15 9 0.3706 -2.3563 2.4295 16 6 3.8980 -1.6856 1.9444 17 6 3.2106 -3.0215 1.6575 18 1 -0.3633 0.0918 -1.0235 19 1 -0.3633 -0.9322 0.4324 20 1 -0.3633 0.8405 0.5913 21 1 -0.0686 3.0923 -1.3569 22 1 1.6084 -2.0286 -0.5129 23 1 3.1499 -1.1386 -0.5133 24 1 1.7791 -1.2853 3.4450 25 1 4.6672 -1.3558 1.2461 26 1 4.0643 -1.4191 2.9881 27 1 2.9246 -3.6342 2.5123 28 1 3.5273 -3.5704 0.7706 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307984850.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:07 Heat of formation + Delta-G solvation = -24.268125 kcal Electronic energy + Delta-G solvation = -14407.350471 eV Core-core repulsion = 11711.116018 eV Total energy + Delta-G solvation = -2696.234454 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.13222 -46.05912 -37.60944 -34.74863 -30.96003 -27.00435 -25.78111 -25.49617 -22.21875 -21.40175 -19.20391 -16.76041 -16.65334 -16.23040 -15.66489 -14.61243 -14.32242 -13.53433 -13.26989 -13.10739 -12.57878 -12.34948 -11.99525 -11.59201 -11.39199 -11.19679 -10.87014 -10.74358 -10.36425 -10.16444 -9.89186 -9.65602 -9.55955 -9.40000 -8.39281 -6.60138 -5.58354 -3.03107 3.44959 3.50357 3.51254 3.94947 4.43011 4.58404 4.74828 5.03736 5.10348 5.37094 5.60380 5.68083 5.81464 5.84478 6.03361 6.12945 6.33018 6.43223 6.54725 6.70426 6.97608 7.63442 7.87186 7.99316 8.52412 9.37076 10.00511 10.49210 11.46432 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.043305 B = 0.012615 C = 0.011445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.417427 B = 2219.094063 C = 2445.926875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.593 5.593 3 C -0.242 4.242 4 H 0.065 0.935 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.286 1.286 11 C 0.188 3.812 12 C -0.200 4.200 13 C 0.303 3.697 14 F -0.160 7.160 15 F -0.217 7.217 16 C -0.156 4.156 17 C -0.167 4.167 18 H 0.017 0.983 19 H -0.006 1.006 20 H 0.048 0.952 21 H 0.251 0.749 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 -8.291 6.296 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.314 5.314 3 C -0.371 4.371 4 H 0.082 0.918 5 C -0.198 4.198 6 N -0.556 5.556 7 Si 0.733 3.267 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.213 1.213 11 C 0.059 3.941 12 C -0.204 4.204 13 C 0.249 3.751 14 F -0.141 7.141 15 F -0.198 7.198 16 C -0.193 4.193 17 C -0.205 4.205 18 H 0.035 0.965 19 H 0.012 0.988 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.102 0.898 25 H 0.118 0.882 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.956 -8.105 6.191 10.939 hybrid contribution 0.304 0.992 0.258 1.069 sum 4.260 -7.113 6.449 10.504 Atomic orbital electron populations 1.20831 0.82197 0.95569 0.97999 1.43883 1.02030 1.00158 1.85300 1.19051 0.96811 0.85336 1.35948 0.91765 1.24943 0.97590 0.98186 0.99042 1.70081 1.17327 1.26651 1.41496 0.86369 0.78342 0.84165 0.77832 1.21152 1.21742 1.21273 1.20205 0.96661 0.88896 0.88360 1.23636 0.92671 1.01986 1.02094 1.20920 0.83186 0.73630 0.97324 1.93238 1.85321 1.42582 1.92910 1.92915 1.66332 1.62809 1.97784 1.22986 0.94612 1.00012 1.01677 1.22885 1.03985 0.90380 1.03240 0.96525 0.98789 0.93302 0.93912 0.93802 0.92656 0.89804 0.88166 0.89231 0.89138 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.71 6.67 59.85 0.40 5.11 15 2 N -0.59 -15.33 1.74 -181.12 -0.31 -15.65 15 3 C -0.24 -6.76 9.22 -15.06 -0.14 -6.90 15 4 H 0.06 1.75 7.86 -52.48 -0.41 1.34 15 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 15 6 N -0.91 -27.47 10.53 55.49 0.58 -26.88 15 7 Si 0.90 22.46 29.57 -169.99 -5.03 17.43 15 8 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 15 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 11 C 0.19 3.96 5.81 -4.04 -0.02 3.94 15 12 C -0.20 -3.52 2.29 -154.51 -0.35 -3.88 15 13 C 0.30 5.59 4.95 37.16 0.18 5.78 15 14 F -0.16 -3.69 10.86 2.25 0.02 -3.67 15 15 F -0.22 -4.06 16.94 2.25 0.04 -4.02 15 16 C -0.16 -2.26 9.82 -26.75 -0.26 -2.53 15 17 C -0.17 -2.27 9.93 -26.76 -0.27 -2.54 15 18 H 0.02 0.47 7.39 -51.93 -0.38 0.09 15 19 H -0.01 -0.16 6.86 -51.93 -0.36 -0.51 15 20 H 0.05 1.39 6.50 -51.93 -0.34 1.06 15 21 H 0.25 7.35 8.31 -40.82 -0.34 7.02 15 22 H 0.04 0.90 8.07 -51.93 -0.42 0.48 15 23 H 0.06 1.14 7.80 -51.93 -0.40 0.74 15 24 H 0.08 1.27 7.90 -51.93 -0.41 0.86 15 25 H 0.10 1.44 8.05 -51.93 -0.42 1.03 15 26 H 0.09 1.16 8.05 -51.93 -0.42 0.74 15 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 28 H 0.10 1.23 8.14 -51.93 -0.42 0.80 15 LS Contribution 237.84 15.07 3.58 3.58 Total: -1.00 -30.90 237.84 -5.20 -36.10 By element: Atomic # 1 Polarization: -2.25 SS G_CDS: -3.54 Total: -5.79 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.55 Total: -1.11 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.27 Total: -42.53 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.06 Total: -7.69 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.90 -5.20 -36.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307984850.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.836 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds