Wall clock time and date at job start Mon Mar 30 2020 02:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 120.00101 * 2 1 4 4 H 1.08003 * 120.00256 * 158.67582 * 3 2 1 5 5 C 1.38811 * 119.99891 * 338.94159 * 3 2 1 6 6 N 1.31613 * 120.00197 * 348.16204 * 5 3 2 7 7 Si 1.86800 * 120.00118 * 168.15465 * 5 3 2 8 8 H 1.48501 * 109.46959 * 60.00449 * 7 5 3 9 9 H 1.48498 * 109.47297 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47036 * 300.00635 * 7 5 3 11 11 C 1.46504 * 120.00121 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47285 * 270.00338 * 11 2 1 13 13 C 1.53000 * 115.55318 * 34.32487 * 12 11 2 14 14 F 1.39905 * 109.47126 * 325.58849 * 13 12 11 15 15 F 1.39903 * 109.46815 * 85.58270 * 13 12 11 16 16 C 1.53002 * 117.49551 * 248.62213 * 12 11 2 17 17 C 1.52998 * 117.50052 * 180.02562 * 12 11 2 18 18 H 1.08995 * 109.47256 * 84.87655 * 1 2 3 19 19 H 1.08998 * 109.47065 * 204.88380 * 1 2 3 20 20 H 1.08999 * 109.46946 * 324.87371 * 1 2 3 21 21 H 0.96999 * 120.00642 * 179.97438 * 6 5 3 22 22 H 1.09001 * 109.46685 * 29.99768 * 11 2 1 23 23 H 1.08994 * 109.47061 * 149.99845 * 11 2 1 24 24 H 1.08996 * 109.47271 * 205.58518 * 13 12 11 25 25 H 1.08996 * 117.49980 * 359.97438 * 16 12 11 26 26 H 1.09003 * 117.49687 * 145.02312 * 16 12 11 27 27 H 1.08995 * 117.50070 * 214.97749 * 17 12 11 28 28 H 1.09001 * 117.49836 * 359.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1743 1.2179 0.3401 5 6 1.5252 2.3479 -0.4320 6 7 0.3680 2.2804 -1.0554 7 14 2.3270 4.0075 -0.1283 8 1 3.6542 4.0451 -0.7934 9 1 1.4649 5.0825 -0.6817 10 1 2.4991 4.2142 1.3322 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 6 1.3510 -1.3584 2.4453 14 9 0.7747 -0.1329 2.0940 15 9 0.3706 -2.3563 2.4295 16 6 3.8980 -1.6856 1.9444 17 6 3.2106 -3.0215 1.6575 18 1 -0.3633 0.0918 -1.0235 19 1 -0.3633 -0.9322 0.4324 20 1 -0.3633 0.8405 0.5913 21 1 -0.0686 3.0923 -1.3569 22 1 1.6084 -2.0286 -0.5129 23 1 3.1499 -1.1386 -0.5133 24 1 1.7791 -1.2853 3.4450 25 1 4.6672 -1.3558 1.2461 26 1 4.0643 -1.4191 2.9881 27 1 2.9246 -3.6342 2.5123 28 1 3.5273 -3.5704 0.7706 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307984850.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:07 Heat of formation + Delta-G solvation = -42.324204 kcal Electronic energy + Delta-G solvation = -14408.133442 eV Core-core repulsion = 11711.116018 eV Total energy + Delta-G solvation = -2697.017424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.62947 -47.60763 -38.98488 -36.65128 -33.02152 -28.63113 -27.83421 -27.14855 -23.55384 -23.11565 -20.69004 -18.73911 -18.12708 -17.75013 -17.29862 -16.47973 -15.70379 -15.31474 -15.17490 -14.82567 -14.07106 -13.88889 -13.67615 -13.31246 -13.04570 -12.80888 -12.62768 -12.36483 -12.25168 -12.03641 -11.91477 -11.40535 -11.05002 -10.79123 -10.52832 -8.68283 -7.74037 -5.20396 1.46873 1.50624 1.56413 2.54408 2.75946 3.10763 3.36134 3.47647 3.62549 3.92368 4.01621 4.10087 4.39255 4.62649 4.78982 4.86979 4.88766 5.00010 5.05478 5.07997 5.28714 5.46120 5.66767 5.78978 6.38777 7.21747 7.94157 8.39455 9.29999 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.043305 B = 0.012615 C = 0.011445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.417427 B = 2219.094063 C = 2445.926875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.205 3.795 2 N -0.607 5.607 3 C -0.239 4.239 4 H 0.072 0.928 5 C -0.062 4.062 6 N -0.946 5.946 7 Si 0.967 3.033 8 H -0.273 1.273 9 H -0.298 1.298 10 H -0.281 1.281 11 C 0.185 3.815 12 C -0.233 4.233 13 C 0.293 3.707 14 F -0.193 7.193 15 F -0.222 7.222 16 C -0.145 4.145 17 C -0.135 4.135 18 H -0.015 1.015 19 H 0.010 0.990 20 H 0.019 0.981 21 H 0.244 0.756 22 H 0.042 0.958 23 H 0.057 0.943 24 H 0.124 0.876 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.036 -9.321 7.619 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.329 5.329 3 C -0.370 4.370 4 H 0.089 0.911 5 C -0.256 4.256 6 N -0.595 5.595 7 Si 0.796 3.204 8 H -0.199 1.199 9 H -0.225 1.225 10 H -0.207 1.207 11 C 0.058 3.942 12 C -0.237 4.237 13 C 0.240 3.760 14 F -0.175 7.175 15 F -0.203 7.203 16 C -0.181 4.181 17 C -0.173 4.173 18 H 0.003 0.997 19 H 0.028 0.972 20 H 0.038 0.962 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.141 0.859 25 H 0.118 0.882 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.890 -9.180 7.529 13.253 hybrid contribution -0.244 1.184 -0.136 1.217 sum 5.646 -7.995 7.394 12.267 Atomic orbital electron populations 1.20401 0.83157 0.94982 0.95474 1.44027 1.01760 1.01450 1.85647 1.19387 0.97008 0.86246 1.34325 0.91052 1.25749 0.98447 1.01720 0.99664 1.70265 1.18988 1.26906 1.43296 0.85330 0.77610 0.79724 0.77716 1.19904 1.22468 1.20735 1.20335 0.95997 0.86796 0.91088 1.23286 0.94511 1.06508 0.99383 1.21434 0.82986 0.72113 0.99516 1.93158 1.86016 1.44877 1.93400 1.92900 1.66754 1.62764 1.97908 1.23124 0.91994 1.00274 1.02750 1.23027 1.00503 0.89360 1.04402 0.99659 0.97194 0.96213 0.94674 0.93944 0.92497 0.85864 0.88173 0.87142 0.86914 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 11.11 6.67 127.77 0.85 11.96 15 2 N -0.61 -31.49 1.74 -726.94 -1.26 -32.76 15 3 C -0.24 -13.36 9.22 84.03 0.77 -12.59 15 4 H 0.07 3.80 7.86 -2.91 -0.02 3.78 15 5 C -0.06 -3.61 5.13 84.86 0.44 -3.17 15 6 N -0.95 -58.76 10.53 21.65 0.23 -58.53 15 7 Si 0.97 46.48 29.57 68.60 2.03 48.51 15 8 H -0.27 -12.47 7.11 99.48 0.71 -11.77 15 9 H -0.30 -14.52 7.11 99.48 0.71 -13.82 15 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 15 11 C 0.18 7.59 5.81 86.38 0.50 8.09 15 12 C -0.23 -7.59 2.29 -52.18 -0.12 -7.71 15 13 C 0.29 10.15 4.95 71.98 0.36 10.51 15 14 F -0.19 -8.88 10.86 44.97 0.49 -8.39 15 15 F -0.22 -7.86 16.94 44.97 0.76 -7.10 15 16 C -0.14 -3.61 9.82 30.58 0.30 -3.31 15 17 C -0.14 -3.09 9.93 30.58 0.30 -2.78 15 18 H -0.01 -0.88 7.39 -2.39 -0.02 -0.90 15 19 H 0.01 0.48 6.86 -2.39 -0.02 0.46 15 20 H 0.02 1.15 6.50 -2.39 -0.02 1.13 15 21 H 0.24 14.79 8.31 -92.71 -0.77 14.02 15 22 H 0.04 1.71 8.07 -2.39 -0.02 1.69 15 23 H 0.06 2.27 7.80 -2.39 -0.02 2.25 15 24 H 0.12 3.29 7.90 -2.39 -0.02 3.27 15 25 H 0.10 2.52 8.05 -2.39 -0.02 2.50 15 26 H 0.11 2.32 8.05 -2.39 -0.02 2.30 15 27 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 28 H 0.11 2.28 8.14 -2.39 -0.02 2.26 15 Total: -1.00 -67.18 237.84 6.79 -60.39 By element: Atomic # 1 Polarization: -4.25 SS G_CDS: 1.14 Total: -3.11 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 3.40 Total: 1.00 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -1.04 Total: -91.29 kcal Atomic # 9 Polarization: -16.74 SS G_CDS: 1.25 Total: -15.49 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -67.18 6.79 -60.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307984850.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.063 kcal (2) G-P(sol) polarization free energy of solvation -67.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds