Wall clock time and date at job start Mon Mar 30 2020 02:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.47839 * 111.00094 * 290.84320 * 11 10 9 13 13 C 1.54910 * 104.79725 * 213.63685 * 12 11 10 14 14 H 1.09005 * 110.99313 * 155.16251 * 13 12 11 15 15 F 1.39902 * 110.99026 * 278.98166 * 13 12 11 16 16 C 1.55136 * 101.65131 * 37.07211 * 13 12 11 17 17 H 1.09001 * 110.85709 * 82.80260 * 16 13 12 18 18 F 1.39908 * 110.70610 * 205.96649 * 16 13 12 19 19 C 1.47445 * 110.99753 * 170.00198 * 11 10 9 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.08995 * 110.37551 * 332.46590 * 12 11 10 26 26 H 1.09005 * 110.37015 * 94.81188 * 12 11 10 27 27 H 1.09000 * 109.88966 * 242.66278 * 19 11 10 28 28 H 1.09004 * 109.88923 * 3.69015 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 0.8212 -5.1473 1.2922 13 6 0.8637 -6.6797 1.5151 14 1 0.7946 -6.9221 2.5756 15 9 -0.1470 -7.3199 0.7899 16 6 2.2641 -7.0394 0.9529 17 1 3.0390 -6.8623 1.6989 18 9 2.2954 -8.3681 0.5158 19 6 2.4206 -6.0697 -0.2372 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 1.3495 -4.6324 2.0945 26 1 -0.2107 -4.8010 1.2326 27 1 2.1485 -6.5738 -1.1645 28 1 3.4494 -5.7144 -0.2965 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335592461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:01 Heat of formation + Delta-G solvation = -123.743447 kcal Electronic energy + Delta-G solvation = -13462.099583 eV Core-core repulsion = 10761.551555 eV Total energy + Delta-G solvation = -2700.548027 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.24403 -48.16718 -39.51885 -35.46517 -33.13508 -30.25689 -29.56606 -26.30578 -23.47048 -22.33019 -21.67983 -18.60972 -18.28663 -17.66715 -16.75911 -16.52301 -16.37796 -15.78016 -15.36528 -15.05555 -14.68266 -14.46269 -14.05592 -13.73816 -13.29844 -13.21741 -12.82699 -12.48512 -12.31524 -11.97908 -11.70866 -11.60763 -11.29317 -11.23133 -10.55391 -9.31186 -8.19606 -6.31363 1.41889 1.43123 1.53927 2.40500 2.86648 2.90452 3.14368 3.22873 3.33185 3.56275 3.88505 4.16465 4.24238 4.35288 4.48208 4.61015 4.71570 4.87836 5.01848 5.08009 5.45180 5.59643 5.76386 5.96811 6.06097 6.27550 6.86528 7.38409 8.92627 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.074459 B = 0.006772 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.956221 B = 4133.721807 C = 4362.295664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.074 3.926 11 N -0.548 5.548 12 C 0.021 3.979 13 C 0.058 3.942 14 H 0.146 0.854 15 F -0.211 7.211 16 C 0.053 3.947 17 H 0.147 0.853 18 F -0.207 7.207 19 C 0.015 3.985 20 H 0.263 0.737 21 H -0.013 1.013 22 H -0.004 1.004 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.993 -11.885 4.862 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.004 4.004 10 C -0.053 4.053 11 N -0.273 5.273 12 C -0.107 4.107 13 C 0.022 3.978 14 H 0.163 0.837 15 F -0.192 7.192 16 C 0.016 3.984 17 H 0.164 0.836 18 F -0.187 7.187 19 C -0.113 4.113 20 H 0.072 0.928 21 H 0.005 0.995 22 H 0.015 0.985 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.469 -11.795 4.424 13.733 hybrid contribution 0.388 0.901 0.248 1.011 sum 5.857 -10.894 4.671 13.222 Atomic orbital electron populations 1.70114 1.07934 1.27785 1.51492 1.25969 0.95684 1.03387 0.94653 0.85429 0.78731 0.78350 0.78403 1.20022 1.20917 1.18374 1.21629 0.93654 0.92078 1.50815 0.91755 1.18917 0.94293 0.92091 0.95093 1.22270 0.95301 0.87646 1.00100 1.63518 1.28826 1.02478 1.32464 1.23644 1.01477 0.94026 0.91576 1.23527 0.84735 0.91830 0.97756 0.83659 1.92802 1.62349 1.83191 1.80832 1.23630 0.98951 0.77371 0.98446 0.83573 1.92810 1.97622 1.36882 1.91421 1.23488 0.97734 0.91482 0.98595 0.92796 0.99498 0.98533 0.91517 0.94072 0.89818 0.90549 0.90274 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.44 15 2 C 0.00 0.06 5.46 84.66 0.46 0.52 15 3 Si 0.97 43.47 29.54 68.60 2.03 45.50 15 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 7 C -0.54 -30.23 9.11 25.60 0.23 -29.99 15 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 15 9 C 0.03 1.75 5.02 29.85 0.15 1.90 15 10 C 0.07 2.94 4.50 86.30 0.39 3.33 15 11 N -0.55 -19.23 5.16 -885.53 -4.57 -23.80 15 12 C 0.02 0.63 5.59 86.78 0.49 1.11 15 13 C 0.06 1.41 4.74 31.98 0.15 1.56 15 14 H 0.15 2.34 8.14 -2.38 -0.02 2.32 15 15 F -0.21 -6.62 16.97 44.97 0.76 -5.86 15 16 C 0.05 1.18 4.64 31.77 0.15 1.33 15 17 H 0.15 2.14 8.14 -2.39 -0.02 2.12 15 18 F -0.21 -5.34 16.92 44.97 0.76 -4.58 15 19 C 0.02 0.41 6.69 86.65 0.58 0.99 15 20 H 0.26 15.04 8.31 -92.71 -0.77 14.27 15 21 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 15 22 H 0.00 -0.21 7.49 -2.39 -0.02 -0.22 15 23 H 0.07 2.60 8.03 -2.39 -0.02 2.58 15 24 H 0.04 1.50 7.85 -2.39 -0.02 1.48 15 25 H 0.08 2.31 7.62 -2.39 -0.02 2.29 15 26 H 0.08 2.66 8.14 -2.38 -0.02 2.64 15 27 H 0.08 2.30 8.10 -2.39 -0.02 2.28 15 28 H 0.09 2.09 7.55 -2.38 -0.02 2.07 15 Total: -1.00 -66.52 244.21 3.00 -63.52 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: 1.14 Total: 0.92 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 2.60 Total: -19.25 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -4.29 Total: -80.24 kcal Atomic # 9 Polarization: -11.96 SS G_CDS: 1.52 Total: -10.44 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.52 3.00 -63.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335592461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.225 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds