Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.50696 * 109.46929 * 119.99606 * 2 1 3 5 5 H 1.08010 * 119.99834 * 120.00336 * 4 2 1 6 6 C 1.37876 * 120.00248 * 299.99623 * 4 2 1 7 7 N 1.31515 * 120.00009 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00059 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47195 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46994 * 120.00303 * 8 6 4 11 11 H 1.48494 * 109.47297 * 240.00216 * 8 6 4 12 12 N 1.46901 * 109.47129 * 239.99812 * 2 1 3 13 13 C 1.46890 * 111.00186 * 84.99881 * 12 2 1 14 14 H 1.09004 * 115.56595 * 350.70176 * 13 12 2 15 15 C 1.53006 * 117.49958 * 136.39403 * 13 12 2 16 16 C 1.52997 * 59.99924 * 107.49156 * 15 13 12 17 17 H 1.09002 * 117.49910 * 252.51140 * 16 15 13 18 18 C 1.53001 * 117.49889 * 107.49507 * 16 15 13 19 19 F 1.39899 * 109.46872 * 231.37286 * 18 16 15 20 20 F 1.39898 * 109.47097 * 351.37164 * 18 16 15 21 21 H 1.08998 * 109.47165 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46958 * 300.00499 * 1 2 3 23 23 H 1.09003 * 109.47029 * 60.00603 * 1 2 3 24 24 H 0.96999 * 119.99991 * 179.97438 * 7 6 4 25 25 H 1.00905 * 110.99847 * 208.95842 * 12 2 1 26 26 H 1.08999 * 117.49661 * 214.97958 * 15 13 12 27 27 H 1.08999 * 117.49552 * 359.97438 * 15 13 12 28 28 H 1.09000 * 109.47300 * 111.37545 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.1483 -2.2855 3.6039 10 1 3.1473 -0.1854 4.8161 11 1 1.1678 -1.5863 4.8166 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2224 -2.3469 14 1 1.6228 1.1991 -2.1954 15 6 3.3265 0.1573 -3.2351 16 6 1.9926 -0.3912 -3.7455 17 1 1.8869 -1.4739 -3.8142 18 6 1.2645 0.4129 -4.8244 19 9 -0.0602 0.6297 -4.4301 20 9 1.9058 1.6436 -5.0012 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 0.7082 1.1611 3.4843 25 1 2.9173 -1.1206 -1.0286 26 1 3.6853 1.0911 -3.6679 27 1 4.0986 -0.5642 -2.9678 28 1 1.2781 -0.1420 -5.7625 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378727801.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = -84.308417 kcal Electronic energy + Delta-G solvation = -13432.848559 eV Core-core repulsion = 10734.010562 eV Total energy + Delta-G solvation = -2698.837996 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.73688 -46.73333 -37.60965 -34.46576 -31.69294 -28.06280 -26.37705 -25.17090 -21.53367 -20.52578 -19.87987 -17.32394 -16.94160 -16.74764 -16.14950 -14.83586 -14.45343 -13.82140 -13.61316 -13.13617 -13.12485 -12.55942 -12.16863 -12.02273 -11.39916 -11.08375 -10.98315 -10.82068 -10.68962 -10.35394 -10.17242 -9.98870 -9.79633 -8.85218 -8.49212 -7.30534 -6.05561 -4.12763 3.27242 3.35102 3.38854 3.85349 4.00000 4.35291 4.45669 4.60040 4.94950 5.24966 5.28575 5.35488 5.56090 5.73851 5.93523 6.25022 6.28202 6.87098 7.15811 7.19999 7.47326 7.74185 7.84940 8.22080 8.30965 8.57223 8.96523 9.53313 11.00826 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.063560 B = 0.007392 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.421227 B = 3787.062206 C = 3985.981996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.006 0.994 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.656 5.656 13 C 0.069 3.931 14 H 0.107 0.893 15 C -0.191 4.191 16 C -0.232 4.232 17 H 0.129 0.871 18 C 0.295 3.705 19 F -0.203 7.203 20 F -0.209 7.209 21 H 0.031 0.969 22 H 0.081 0.919 23 H 0.007 0.993 24 H 0.261 0.739 25 H 0.337 0.663 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -1.175 -11.791 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.023 0.977 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.286 5.286 13 C -0.044 4.044 14 H 0.125 0.875 15 C -0.230 4.230 16 C -0.252 4.252 17 H 0.147 0.853 18 C 0.241 3.759 19 F -0.184 7.184 20 F -0.191 7.191 21 H 0.050 0.950 22 H 0.100 0.900 23 H 0.026 0.974 24 H 0.071 0.929 25 H 0.156 0.844 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.730 -1.281 -11.756 11.952 hybrid contribution 0.936 0.116 0.984 1.363 sum 2.666 -1.165 -10.773 11.159 Atomic orbital electron populations 1.21730 0.97590 0.99472 0.99599 1.19192 0.92827 0.92490 0.84969 0.97664 1.21266 1.31680 1.12630 0.90395 0.92123 1.24919 0.94976 0.94975 0.99090 1.69910 1.36447 1.22841 1.23474 0.86440 0.78610 0.79569 0.82765 1.19750 1.21058 1.20931 1.60371 1.31479 1.31213 1.05500 1.22489 0.97742 0.96284 0.87862 0.87505 1.23510 0.91012 1.02989 1.05492 1.23669 1.02337 1.00945 0.98260 0.85273 1.21211 0.75150 0.81048 0.98517 1.93001 1.37065 1.95392 1.92924 1.92936 1.81890 1.47776 1.96466 0.94956 0.90006 0.97401 0.92883 0.84385 0.88215 0.88132 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.19 37.16 0.34 -2.86 15 2 C 0.21 5.42 2.50 -68.87 -0.17 5.25 15 3 H 0.01 0.16 7.73 -51.93 -0.40 -0.24 15 4 C -0.52 -14.25 8.59 -34.44 -0.30 -14.54 15 5 H 0.06 1.62 7.62 -52.48 -0.40 1.22 15 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 15 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 15 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 12 N -0.66 -14.01 6.58 -100.96 -0.66 -14.68 15 13 C 0.07 1.27 5.67 -67.71 -0.38 0.88 15 14 H 0.11 2.15 7.77 -51.93 -0.40 1.75 15 15 C -0.19 -2.77 9.62 -26.73 -0.26 -3.03 15 16 C -0.23 -3.38 6.08 -90.62 -0.55 -3.93 15 17 H 0.13 1.78 8.14 -51.93 -0.42 1.36 15 18 C 0.29 3.91 5.67 37.16 0.21 4.12 15 19 F -0.20 -3.27 17.29 2.25 0.04 -3.23 15 20 F -0.21 -3.03 15.91 2.25 0.04 -2.99 15 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.08 2.25 6.07 -51.93 -0.32 1.94 15 23 H 0.01 0.17 8.07 -51.93 -0.42 -0.25 15 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 25 H 0.34 6.86 8.01 -39.29 -0.31 6.54 15 26 H 0.10 1.38 7.22 -51.93 -0.37 1.00 15 27 H 0.10 1.35 8.09 -51.93 -0.42 0.93 15 28 H 0.11 1.00 8.14 -51.93 -0.42 0.58 15 LS Contribution 247.91 15.07 3.74 3.74 Total: -1.00 -28.90 247.91 -5.90 -34.80 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.45 Total: 3.54 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.20 Total: -12.50 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: -0.04 Total: -39.48 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.07 Total: -6.23 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.90 -5.90 -34.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378727801.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.508 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds