Wall clock time and date at job start Mon Mar 30 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.50696 * 109.46929 * 119.99606 * 2 1 3 5 5 H 1.08010 * 119.99834 * 120.00336 * 4 2 1 6 6 C 1.37876 * 120.00248 * 299.99623 * 4 2 1 7 7 N 1.31515 * 120.00009 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00059 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47195 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46994 * 120.00303 * 8 6 4 11 11 H 1.48494 * 109.47297 * 240.00216 * 8 6 4 12 12 N 1.46901 * 109.47129 * 239.99812 * 2 1 3 13 13 C 1.46890 * 111.00186 * 84.99881 * 12 2 1 14 14 H 1.09004 * 115.56595 * 350.70176 * 13 12 2 15 15 C 1.53006 * 117.49958 * 136.39403 * 13 12 2 16 16 C 1.52997 * 59.99924 * 107.49156 * 15 13 12 17 17 H 1.09002 * 117.49910 * 252.51140 * 16 15 13 18 18 C 1.53001 * 117.49889 * 107.49507 * 16 15 13 19 19 F 1.39899 * 109.46872 * 231.37286 * 18 16 15 20 20 F 1.39898 * 109.47097 * 351.37164 * 18 16 15 21 21 H 1.08998 * 109.47165 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46958 * 300.00499 * 1 2 3 23 23 H 1.09003 * 109.47029 * 60.00603 * 1 2 3 24 24 H 0.96999 * 119.99991 * 179.97438 * 7 6 4 25 25 H 1.00905 * 110.99847 * 208.95842 * 12 2 1 26 26 H 1.08999 * 117.49661 * 214.97958 * 15 13 12 27 27 H 1.08999 * 117.49552 * 359.97438 * 15 13 12 28 28 H 1.09000 * 109.47300 * 111.37545 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3225 -1.1193 4.0080 9 1 3.1483 -2.2855 3.6039 10 1 3.1473 -0.1854 4.8161 11 1 1.1678 -1.5863 4.8166 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2224 -2.3469 14 1 1.6228 1.1991 -2.1954 15 6 3.3265 0.1573 -3.2351 16 6 1.9926 -0.3912 -3.7455 17 1 1.8869 -1.4739 -3.8142 18 6 1.2645 0.4129 -4.8244 19 9 -0.0602 0.6297 -4.4301 20 9 1.9058 1.6436 -5.0012 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 0.7082 1.1611 3.4843 25 1 2.9173 -1.1206 -1.0286 26 1 3.6853 1.0911 -3.6679 27 1 4.0986 -0.5642 -2.9678 28 1 1.2781 -0.1420 -5.7625 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378727801.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:00 Heat of formation + Delta-G solvation = -103.064529 kcal Electronic energy + Delta-G solvation = -13433.661885 eV Core-core repulsion = 10734.010562 eV Total energy + Delta-G solvation = -2699.651322 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.85544 -47.87623 -39.06300 -36.31200 -33.62982 -29.81295 -27.69180 -27.25569 -22.99246 -21.92892 -21.59936 -18.66028 -18.40936 -17.98689 -17.61154 -16.75962 -15.98141 -15.60332 -14.82941 -14.66703 -14.36920 -14.28616 -13.63151 -13.41734 -13.13011 -12.86619 -12.70618 -12.55667 -12.29792 -12.17100 -11.98199 -11.56615 -11.32715 -10.89253 -10.57385 -8.98631 -8.15359 -6.30629 1.42065 1.43600 1.55682 2.40167 2.59515 2.93163 3.13455 3.27985 3.50119 3.71232 4.01709 4.06809 4.34364 4.43927 4.72600 4.78683 4.90673 5.05582 5.11087 5.17742 5.44211 5.64784 5.80730 6.16672 6.40552 6.70226 6.95280 7.40208 8.90990 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.063560 B = 0.007392 C = 0.007023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.421227 B = 3787.062206 C = 3985.981996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.217 3.783 3 H -0.029 1.029 4 C -0.539 4.539 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.653 5.653 13 C 0.022 3.978 14 H 0.079 0.921 15 C -0.164 4.164 16 C -0.208 4.208 17 H 0.145 0.855 18 C 0.288 3.712 19 F -0.222 7.222 20 F -0.218 7.218 21 H 0.029 0.971 22 H 0.058 0.942 23 H 0.015 0.985 24 H 0.263 0.737 25 H 0.340 0.660 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 -2.455 -12.815 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 H -0.012 1.012 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.283 5.283 13 C -0.090 4.090 14 H 0.097 0.903 15 C -0.203 4.203 16 C -0.228 4.228 17 H 0.163 0.837 18 C 0.234 3.766 19 F -0.204 7.204 20 F -0.199 7.199 21 H 0.048 0.952 22 H 0.076 0.924 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.159 0.841 26 H 0.127 0.873 27 H 0.136 0.864 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.712 -2.561 -12.813 13.344 hybrid contribution 0.642 0.558 1.236 1.500 sum 3.354 -2.003 -11.576 12.217 Atomic orbital electron populations 1.21545 0.97893 0.98882 0.98770 1.18940 0.92599 0.90880 0.86650 1.01189 1.21597 1.31871 1.12846 0.91372 0.91799 1.25789 0.95070 0.95642 1.02261 1.70044 1.37417 1.24172 1.24249 0.85360 0.78076 0.78574 0.78707 1.18748 1.20630 1.20657 1.60296 1.31853 1.31475 1.04634 1.22392 1.02242 0.95575 0.88787 0.90314 1.23546 0.90557 1.03753 1.02436 1.23796 1.01785 1.01895 0.95319 0.83684 1.21782 0.73739 0.80888 1.00143 1.92966 1.38586 1.95517 1.93304 1.92921 1.81952 1.48549 1.96491 0.95175 0.92352 0.96632 0.92767 0.84050 0.87315 0.86419 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.89 9.19 71.98 0.66 -5.23 15 2 C 0.22 11.38 2.50 44.17 0.11 11.49 15 3 H -0.03 -1.71 7.73 -2.39 -0.02 -1.73 15 4 C -0.54 -29.68 8.59 25.60 0.22 -29.46 15 5 H 0.06 3.40 7.62 -2.91 -0.02 3.38 15 6 C 0.01 0.64 5.30 84.65 0.45 1.09 15 7 N -0.92 -53.66 11.32 21.45 0.24 -53.42 15 8 Si 0.97 43.33 29.54 68.60 2.03 45.35 15 9 H -0.26 -11.29 7.11 99.48 0.71 -10.59 15 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 12 N -0.65 -27.85 6.58 -473.32 -3.11 -30.96 15 13 C 0.02 0.79 5.67 44.92 0.25 1.05 15 14 H 0.08 3.29 7.77 -2.38 -0.02 3.27 15 15 C -0.16 -4.38 9.62 30.60 0.29 -4.09 15 16 C -0.21 -5.53 6.08 -10.79 -0.07 -5.59 15 17 H 0.15 3.46 8.14 -2.39 -0.02 3.44 15 18 C 0.29 6.81 5.67 71.98 0.41 7.22 15 19 F -0.22 -6.87 17.29 44.97 0.78 -6.09 15 20 F -0.22 -5.84 15.91 44.97 0.72 -5.13 15 21 H 0.03 1.53 8.14 -2.39 -0.02 1.51 15 22 H 0.06 3.31 6.07 -2.39 -0.01 3.30 15 23 H 0.01 0.73 8.07 -2.39 -0.02 0.71 15 24 H 0.26 14.49 8.31 -92.71 -0.77 13.72 15 25 H 0.34 13.65 8.01 -89.69 -0.72 12.93 15 26 H 0.11 2.74 7.22 -2.39 -0.02 2.72 15 27 H 0.12 2.78 8.09 -2.39 -0.02 2.76 15 28 H 0.16 2.21 8.14 -2.39 -0.02 2.19 15 Total: -1.00 -62.85 247.91 3.42 -59.43 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.44 Total: 14.34 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 2.33 Total: -23.52 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -2.87 Total: -84.38 kcal Atomic # 9 Polarization: -12.71 SS G_CDS: 1.49 Total: -11.22 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -62.85 3.42 -59.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378727801.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.639 kcal (2) G-P(sol) polarization free energy of solvation -62.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds